View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_high_22 (Length: 250)
Name: NF18240_high_22
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_22 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 52477964 - 52478193
Alignment:
| Q |
13 |
aatattcacgtgagatatatatggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52477964 |
aatattcacgtgagatat----ggtatagaagaaagtcatgatatatatggccgaccagcactaaattaaaatttgaaacatgaagttccactttgaaat |
52478059 |
T |
|
| Q |
113 |
agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacattattaattaacgatcaaatt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52478060 |
agaagtgggagaatgcgtaagcccttgtcaagatatttgataacttgtccaatcatgcttcataatcataattcatacatt----attaacgatcaaatt |
52478155 |
T |
|
| Q |
213 |
aacattagatagtcatggtcatgagtgacgccatgcca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52478156 |
aacattagatagtcatggtcatgagtgacgccatgcca |
52478193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University