View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_26 (Length: 229)
Name: NF18240_high_26
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 35929284 - 35929080
Alignment:
| Q |
19 |
aataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttg |
118 |
Q |
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| T |
35929284 |
aataagatgaagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttg |
35929185 |
T |
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| Q |
119 |
atgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttctgctccctatgctac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
35929184 |
atgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttctgctccttatgttac |
35929085 |
T |
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| Q |
219 |
tcctc |
223 |
Q |
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|||| |
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| T |
35929084 |
gcctc |
35929080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 35911953 - 35911772
Alignment:
| Q |
22 |
aagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatg |
121 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| |||||||||||||| |||||||||||| || |
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| T |
35911953 |
aagatgaagaaggtttctctttatgcttgtttactactcaacttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttg |
35911854 |
T |
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| Q |
122 |
agtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttc |
203 |
Q |
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| T |
35911853 |
agtttattctgtctagaacctcacagaatcctcctaagactctttcatgggaagaggaagatgcattgaaaacacattcttc |
35911772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 35941474 - 35941309
Alignment:
| Q |
22 |
aagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatg |
121 |
Q |
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||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
35941474 |
aagatggagaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagctagtcaagctgataaactcaatg |
35941375 |
T |
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| Q |
122 |
agtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcat |
187 |
Q |
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| T |
35941374 |
agtttattctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcat |
35941309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 35922609 - 35922429
Alignment:
| Q |
22 |
aagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatg |
121 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
35922609 |
aagatgaagaaggtttctctttatgcttgtttattactcaacttgagccttttggttatttttccatatagcaaagctagtcaagctgataaactcaatg |
35922510 |
T |
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| Q |
122 |
agtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattctt |
202 |
Q |
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|||||||||| ||||||| || ||||||||||| ||||| |||||||||||||||| |||||||| |||||| |||||| |
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| T |
35922509 |
agtttattctgtctagaaaatctcagaatcctcccaagacactttcttgggaagagggagatgcattgaaaacacattctt |
35922429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 35916343 - 35916160
Alignment:
| Q |
22 |
aagatggagaaggtttctctttatgcttgtttactactcagcgtga---gttttttggttatttttccatatagcaaagctagtcaaactgataaacttg |
118 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35916343 |
aagatgaagaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagctagtcaagctgataaactca |
35916244 |
T |
|
| Q |
119 |
atgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattctt |
202 |
Q |
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||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||| |
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| T |
35916243 |
atgagtttattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacattctt |
35916160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 35935924 - 35935742
Alignment:
| Q |
22 |
aagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatg |
121 |
Q |
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|||||| |||| |||||||||||||||||||| |||||| | ||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
35935924 |
aagatgaagaaaatttctctttatgcttgtttattactcaacttgagtctcttggttatttttccttatagcaaagctagtcaagctgataaacttgatg |
35935825 |
T |
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| Q |
122 |
agtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttct |
204 |
Q |
| |
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|| || |||| ||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||| |
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| T |
35935824 |
agctttttctgtctagaaaatcacagaatcctcccaagactctttcttgggaagagggagaagcattgaaaacactttcttct |
35935742 |
T |
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