View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_29 (Length: 216)
Name: NF18240_high_29
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_29 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 35928914 - 35929117
Alignment:
| Q |
13 |
actaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattgat |
112 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||| | |
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| T |
35928914 |
actaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagctctcttccagcctcaggattaacagtgacatagcctgaatattggt |
35929013 |
T |
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| Q |
113 |
caaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgaggcgtaacataaggagcagaagaatctgtttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929014 |
caaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgccttagcccctcttgaggcgtaacataaggagcagaagaatctgtttt |
35929113 |
T |
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| Q |
213 |
agat |
216 |
Q |
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|||| |
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| T |
35929114 |
agat |
35929117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 35941096 - 35941270
Alignment:
| Q |
8 |
ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941096 |
ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata |
35941195 |
T |
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| Q |
108 |
ttgatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg |
182 |
Q |
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| T |
35941196 |
ttggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg |
35941270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 35911575 - 35911749
Alignment:
| Q |
8 |
ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata |
107 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
35911575 |
ataatactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctctaccagcctcaggatcaactgtgacatagcctgaata |
35911674 |
T |
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| Q |
108 |
ttgatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg |
182 |
Q |
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||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
35911675 |
ttggtcaaaatttaccccatagggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgagg |
35911749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 35915966 - 35916136
Alignment:
| Q |
12 |
tactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattga |
111 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35915966 |
tactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattgg |
35916065 |
T |
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| Q |
112 |
tcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg |
182 |
Q |
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|||||||| |||||||| ||||||||||||||||| | |||||||| ||| | |||||| |||||||||| |
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| T |
35916066 |
tcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctcttgagg |
35916136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 35922233 - 35922405
Alignment:
| Q |
10 |
aatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatatt |
109 |
Q |
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|||| ||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35922233 |
aatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatatt |
35922332 |
T |
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| Q |
110 |
gatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg |
182 |
Q |
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| T |
35922333 |
ggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg |
35922405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 35935548 - 35935720
Alignment:
| Q |
10 |
aatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatatt |
109 |
Q |
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|||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| | |||||| ||||| || ||||| || || |||| |
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| T |
35935548 |
aatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgctcttccggcctcaggttcaacagtcacataaccagagtatt |
35935647 |
T |
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| Q |
110 |
gatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg |
182 |
Q |
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| T |
35935648 |
ggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg |
35935720 |
T |
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