View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_high_4 (Length: 690)
Name: NF18240_high_4
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 223 - 680
Target Start/End: Original strand, 2252718 - 2253175
Alignment:
| Q |
223 |
tgaggttaattgaagctccattgataggtcctttcttgttgactatgttgaagaaggaaaataaaattgatcaggtttgtgtcactcattgagttagtgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252718 |
tgaggttaattgaagctccattgataggtcctttcttgttgactatgttgaagaaggaaaataaaattgatcaggtttgtgtcactcattgagttagtgt |
2252817 |
T |
|
| Q |
323 |
gtttgaatttttctgttgcttaaattgttactcgtgtttgcgcattttactttgaagaagttttttcttcagttgtgtcgttataatattttgagtaggt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252818 |
gtttgaatttttctgttgcttaaattgttactcgtgtttgcgcattttactttgaagaagttttttcttcagttgtgtcgttataatattttgagtaggt |
2252917 |
T |
|
| Q |
423 |
tgtgaactacactaacatctaagttatataactgacacttcagattgaaagtgtatttgagtgtctgacacatgtcgatgtccaaagctgatatgacatt |
522 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252918 |
tgtgaactacaccaacatctaagttatataactgacacttcaaattgaaagcgtatttgagtgtctgacacatgtcgatgtccaaagctgatatgacatt |
2253017 |
T |
|
| Q |
523 |
gacaccttacaagcacttttaatttttaaaaccatttttagtgcctagctatcggtgtcatgtctgatgtttgtgtcaatgcttcgtagagtgacattgg |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2253018 |
gacaccttacaagcacttttaatttttaaaaccatttttagtgcctagctatcggtgtcatgtctgatgtttgtgtcaatgcttcgtagagtgacattgg |
2253117 |
T |
|
| Q |
623 |
tgactggttttatattatgtctgcttgttttacttttaattatccggttttgatgatg |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2253118 |
tgactggttttatattatgtctgcttgttttacttttaattatccggttttgatgatg |
2253175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 2252501 - 2252641
Alignment:
| Q |
18 |
gaagaagcgtgtaatggtgccggcgaaggacgtagatttgtcttcaatcaaatacgaacctgaaattgttcaaggttattcattcattccactaacttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252501 |
gaagaagcgtgtaatggtgccggcgaaggacgtagatttgtcttcaatcaaatacgaacctgaaattgttcaaggttattcattcattccactaacttta |
2252600 |
T |
|
| Q |
118 |
attgcttcttctttcgttaaccaatttcactccaattcaac |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252601 |
attgcttcttctttcgttaaccaatttcactccaattcaac |
2252641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 18012501 - 18012462
Alignment:
| Q |
456 |
gacacttcagattgaaagtgtatttgagtgtctgacacatg |
496 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
18012501 |
gacacttcagattgaaagtgtttttg-gtgtctgacacatg |
18012462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University