View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_9 (Length: 498)
Name: NF18240_high_9
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Original strand, 36360175 - 36360650
Alignment:
| Q |
10 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
109 |
Q |
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| T |
36360175 |
aggaccagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
36360274 |
T |
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| Q |
110 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgg |
209 |
Q |
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| T |
36360275 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttatttttttagaaaatcatt-gatgttaatagaaaaccaaattagtatcgtatgg |
36360373 |
T |
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| Q |
210 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattatgatttttaagctacatattaagagtttattatacctgtgtgtcatccgtat |
309 |
Q |
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| T |
36360374 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattttgatttttaagctatatattaagagtttattatacctgtgtgtcatccgtat |
36360473 |
T |
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| Q |
310 |
gaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttg |
409 |
Q |
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| T |
36360474 |
gaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttg |
36360573 |
T |
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| Q |
410 |
ctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtg |
486 |
Q |
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| T |
36360574 |
ctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtg |
36360650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 36348911 - 36349031
Alignment:
| Q |
10 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc------cctgacgaacatactacttcccaagcc |
103 |
Q |
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| T |
36348911 |
aggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagcc |
36349010 |
T |
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| Q |
104 |
ttcttgaatgcctgaatatta |
124 |
Q |
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| T |
36349011 |
ttctcgaatgcctgaatatta |
36349031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 36349119 - 36349196
Alignment:
| Q |
288 |
tatacctgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaa |
365 |
Q |
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| T |
36349119 |
tatacctgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaatttgaagtgaacttgaa |
36349196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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