View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18240_low_10 (Length: 409)

Name: NF18240_low_10
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18240_low_10
NF18240_low_10
[»] chr1 (18 HSPs)
chr1 (1-392)||(5601990-5602374)
chr1 (273-392)||(26650996-26651115)
chr1 (274-392)||(19422705-19422823)
chr1 (181-275)||(14582447-14582541)
chr1 (181-275)||(26650428-26650522)
chr1 (180-275)||(31289454-31289548)
chr1 (274-392)||(14582245-14582363)
chr1 (181-267)||(39746674-39746760)
chr1 (181-275)||(13891504-13891598)
chr1 (181-271)||(38734829-38734919)
chr1 (274-389)||(38734425-38734537)
chr1 (304-392)||(13890960-13891047)
chr1 (304-392)||(10106250-10106336)
chr1 (180-275)||(12179405-12179495)
chr1 (181-275)||(10106740-10106835)
chr1 (277-322)||(21498176-21498221)
chr1 (277-322)||(52100745-52100790)
chr1 (274-322)||(14819497-14819545)
[»] chr7 (20 HSPs)
chr7 (274-392)||(28292334-28292452)
chr7 (274-392)||(24528501-24528619)
chr7 (274-392)||(9973608-9973726)
chr7 (181-275)||(9973968-9974062)
chr7 (181-275)||(33227018-33227113)
chr7 (180-271)||(7358037-7358128)
chr7 (181-275)||(24529089-24529183)
chr7 (180-271)||(28291841-28291932)
chr7 (180-239)||(10437398-10437457)
chr7 (180-239)||(10451108-10451167)
chr7 (277-322)||(19096779-19096824)
chr7 (277-330)||(47761832-47761884)
chr7 (180-276)||(47762410-47762498)
chr7 (277-322)||(846132-846177)
chr7 (277-322)||(853509-853554)
chr7 (277-322)||(1211513-1211558)
chr7 (277-322)||(8954791-8954836)
chr7 (274-315)||(14928157-14928198)
chr7 (274-315)||(15351623-15351664)
chr7 (277-322)||(36477502-36477547)
[»] chr8 (17 HSPs)
chr8 (274-392)||(31030675-31030793)
chr8 (274-392)||(33616557-33616675)
chr8 (181-275)||(19430732-19430826)
chr8 (181-275)||(19436174-19436268)
chr8 (181-275)||(19566881-19566975)
chr8 (181-275)||(19572323-19572417)
chr8 (274-392)||(19430161-19430276)
chr8 (274-392)||(19435663-19435778)
chr8 (274-392)||(19566310-19566425)
chr8 (274-392)||(19571812-19571927)
chr8 (181-275)||(31031255-31031349)
chr8 (274-338)||(13584500-13584564)
chr8 (181-275)||(33616064-33616158)
chr8 (180-275)||(13584869-13584969)
chr8 (277-322)||(4582820-4582865)
chr8 (277-322)||(22104200-22104245)
chr8 (294-322)||(16066762-16066790)
[»] chr3 (19 HSPs)
chr3 (274-392)||(53119674-53119792)
chr3 (274-392)||(33089174-33089292)
chr3 (274-392)||(20810518-20810636)
chr3 (180-275)||(33088615-33088710)
chr3 (181-275)||(13022748-13022842)
chr3 (181-275)||(53120220-53120314)
chr3 (274-392)||(38436789-38436907)
chr3 (181-275)||(38436270-38436364)
chr3 (274-392)||(13022174-13022289)
chr3 (209-275)||(20811111-20811177)
chr3 (285-392)||(26962205-26962313)
chr3 (285-381)||(26928762-26928858)
chr3 (293-393)||(6025302-6025403)
chr3 (277-322)||(18350299-18350344)
chr3 (287-324)||(21494153-21494190)
chr3 (220-275)||(11777273-11777324)
chr3 (181-247)||(26929433-26929498)
chr3 (277-322)||(8196977-8197022)
chr3 (277-322)||(51922859-51922904)
[»] chr2 (7 HSPs)
chr2 (274-392)||(42914788-42914906)
chr2 (274-392)||(5089424-5089542)
chr2 (181-275)||(42915262-42915356)
chr2 (180-275)||(5089777-5089873)
chr2 (277-322)||(6856722-6856767)
chr2 (277-322)||(42248752-42248797)
chr2 (277-322)||(34069944-34069989)
[»] chr6 (19 HSPs)
chr6 (181-275)||(19478837-19478931)
chr6 (274-392)||(19478294-19478412)
chr6 (181-275)||(17289607-17289698)
chr6 (181-275)||(14450601-14450690)
chr6 (311-392)||(13604960-13605041)
chr6 (277-393)||(3902058-3902174)
chr6 (285-393)||(17281405-17281512)
chr6 (181-275)||(10485798-10485890)
chr6 (277-393)||(3902416-3902532)
chr6 (184-267)||(17280865-17280943)
chr6 (309-392)||(31475871-31475954)
chr6 (309-392)||(31495707-31495790)
chr6 (309-392)||(31501093-31501176)
chr6 (302-392)||(31515590-31515680)
chr6 (277-322)||(26981120-26981165)
chr6 (277-314)||(29325760-29325797)
chr6 (279-322)||(27073510-27073553)
chr6 (181-275)||(29326295-29326383)
chr6 (277-317)||(18387462-18387502)
[»] chr4 (11 HSPs)
chr4 (274-392)||(10120640-10120758)
chr4 (181-275)||(10119806-10119900)
chr4 (181-393)||(8082773-8082976)
chr4 (274-393)||(24490178-24490296)
chr4 (181-271)||(24490797-24490882)
chr4 (180-275)||(653687-653783)
chr4 (274-322)||(10120412-10120460)
chr4 (304-392)||(653190-653277)
chr4 (279-393)||(10318614-10318729)
chr4 (277-322)||(9185208-9185253)
chr4 (277-322)||(9191073-9191118)
[»] scaffold0132 (3 HSPs)
scaffold0132 (181-275)||(2421-2515)
scaffold0132 (181-275)||(10381-10475)
scaffold0132 (277-322)||(24820-24865)
[»] scaffold0011 (4 HSPs)
scaffold0011 (274-392)||(7193-7311)
scaffold0011 (181-275)||(2325-2420)
scaffold0011 (181-275)||(7579-7674)
scaffold0011 (274-392)||(1712-1830)
[»] chr5 (10 HSPs)
chr5 (273-392)||(24435700-24435817)
chr5 (304-392)||(7805218-7805304)
chr5 (304-392)||(14374282-14374368)
chr5 (181-275)||(13581981-13582076)
chr5 (181-275)||(14374823-14374917)
chr5 (277-322)||(21826748-21826793)
chr5 (277-322)||(41096923-41096968)
chr5 (180-275)||(7805772-7805868)
chr5 (304-392)||(13582551-13582638)
chr5 (277-322)||(26869838-26869883)
[»] scaffold0067 (2 HSPs)
scaffold0067 (181-275)||(33305-33393)
scaffold0067 (285-393)||(33810-33918)
[»] scaffold0991 (1 HSPs)
scaffold0991 (277-322)||(223-268)
[»] scaffold0044 (1 HSPs)
scaffold0044 (277-322)||(64685-64730)
[»] scaffold1910 (1 HSPs)
scaffold1910 (277-321)||(392-436)
[»] scaffold0357 (1 HSPs)
scaffold0357 (277-322)||(3871-3916)
[»] scaffold0015 (1 HSPs)
scaffold0015 (277-322)||(193791-193836)
[»] scaffold0205 (1 HSPs)
scaffold0205 (274-314)||(30800-30840)
[»] scaffold0019 (1 HSPs)
scaffold0019 (274-314)||(30217-30257)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 5601990 - 5602374
Alignment:
Q  1 taggccataactgcaatacattttcctcaatatacgtatctaactgttatgtactcatttgtggatatacattgttaagacttaagcacgaggagaattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5601990 taggccataactgcaatacattttcctcaatatacgtatctaactgttatgtactcatttgtggatatacattgttaagacttaagcacgaggagagttc 5602089  T
Q  101 aactcaaaatattagtatataacatgaaggagtcttatggtttaaatataggacatatatgtacatattagtagtgccgctgttggaacactagttgaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5602090 aactcaaaatattagtatataacatgaaggagtcttatggtttaaatataggacatatatgtacatattagtagtgccgctgttggaacactagttgaat 5602189  T
Q  201 ttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattaacgagtcattcttctgcttctact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5602190 ttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattaacgagtcattcttctgcttctact 5602289  T
Q  301 cctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5602290 c-------tccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 5602374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 26650996 - 26651115
Alignment:
Q  273 attaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaa 372  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26650996 attaacgagtcgttctcctgcttctactcctttcagtccctttcggtttcgaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaa 26651095  T
Q  373 ctatattttgaggtgtatat 392  Q
    |||||||| |||||||||||    
T  26651096 ctatatttcgaggtgtatat 26651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 19422705 - 19422823
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| | |||||||||    
T  19422705 ttaacgagtcactcttgtgcttctactcctttctgtccctttcggtttcgattagagcggctacataccgtattgaatagttttaatcgatcgattaaac 19422804  T
Q  374 tatattttgaggtgtatat 392  Q
    |||||||||||||||||||    
T  19422805 tatattttgaggtgtatat 19422823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 14582541 - 14582447
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14582541 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 14582447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 26650428 - 26650522
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 26650522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 31289548 - 31289454
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289548 ctgttggaacactagttgaatctagtgagaaaattggataagaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 31289454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 14582363 - 14582245
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||  |    
T  14582363 ttaacgagtcattcttcggcttctacttctttctatccctttcggtttcgaatagagcggctacataccgtattgaatagttttaatcgaacgattaggc 14582264  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  14582263 tatatttagaggtgtatat 14582245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 39746674 - 39746760
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgt 267  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39746674 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgt 39746760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 13891598 - 13891504
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtaagtgtgtgacttaaaaatgtcccacatt 13891504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 38734919 - 38734829
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtccca 271  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtccca 38734829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 38734537 - 38734425
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| | |||||  ||  |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38734537 ttaacgagtcattcttttccttctcttc--ttctgtccctttcgatttcgaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaac 38734440  T
Q  374 tatattttgaggtgta 389  Q
    |||| |||||||||||    
T  38734439 tata-tttgaggtgta 38734425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 13891047 - 13890960
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13891047 ttctgtccctttcggtttcgaacagaacggctacgtaccgtattgaatagttttaatcaaacgattaaactata-tttgaggtgtatat 13890960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 10106336 - 10106250
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||||||||| |  ||| |||||  |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  10106336 ttctgtccctttcggtttcaatcagaacggcttcgtaccgtattgaatag-tttaatcaaacgattaaactata-tttgaggtgtatat 10106250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 12179495 - 12179405
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||| |||||| | | |||| | ||||||||||| ||||||||||||||||||||||||    ||||||||||||||||| ||| |||||    
T  12179495 ctgttggaaccctagttaattctagtaaaaaaattggata-gaaaaacacaatgtaagaactagt----gtgtgtgacttaaaaatatcctacatt 12179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 10106835 - 10106740
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaac-acaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||  | |||| ||  || |  || |||||||||||  ||||||||||||||||||||||||||    
T  10106835 tgttggaacactagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacatt 10106740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 21498221 - 21498176
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  21498221 acgagtctttcttctttttctactcctttctgtccctttcggtttc 21498176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 52100745 - 52100790
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||| ||||||||||    
T  52100745 acgagtctttcttctttttctactcctttctgtccttttcggtttc 52100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 14819545 - 14819497
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    |||||||||| |||||||  |||||||||||| ||||||||||| ||||    
T  14819545 ttaacgagtctttcttctttttctactcctttttgtccctttcgatttc 14819497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 28292334 - 28292452
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28292334 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaac 28292433  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  28292434 tatatttcgaggtgtatat 28292452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 24528619 - 24528501
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24528619 ttaacgagtcattcttctgcttctactcctttctgtcccttccggtttcgaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaac 24528520  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  24528519 tatatttcgaggtgtatat 24528501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 9973726 - 9973608
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||    
T  9973726 ttaacgagtcattcttctgcttcaactcctttccgtccctttcggtttcgaatagagcggctacgtaccgtattgaatagtttcaatcgaacgattagac 9973627  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  9973626 tatatttagaggtgtatat 9973608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 9974062 - 9973968
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacatt 9973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 33227113 - 33227018
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataag-aaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33227113 tgttggaacactagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatt 33227018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 7358128 - 7358037
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtccca 271  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  7358128 ctgttggaacactagttgaatcttttgagaaaattggataagaaaaacacaatgcaagaactagtgtgagcgtgtgacttaaaaatgtccca 7358037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 24529183 - 24529089
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||    
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacataatataagaactagtgtgagtgtgtgacttaaaaatatcctacatt 24529089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 28291841 - 28291932
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtccca 271  Q
    ||||||||||||||||| ||| || | |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28291841 ctgttggaacactagttaaatctaattagaaaattggataagaaaaacacaatataagaactagtgtgagcgtgtgacttaaaaatgtccca 28291932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 10437457 - 10437398
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaa 239  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10437457 ctgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 10437398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 10451167 - 10451108
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaa 239  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10451167 ctgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 10451108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 19096824 - 19096779
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  19096824 acgagtctttcttctttttctactcctttctgtccctttcggtttc 19096779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 47761884 - 47761832
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagag 330  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||    
T  47761884 acgagtctttcttctgcttctactcctttttgtccc-ttcggtttcgattagag 47761832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 47762498 - 47762410
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatta 276  Q
    ||||||||||||||| | | | |||||| ||||||| ||| |||||||||||||||||||||||      |||||||||||||||||| ||||||||    
T  47762498 ctgttggaacactagctaagtctagtga-aaaattgaata-gaaaaacacaatgtaagaactag------tgtgtgacttaaaaatgttccacatta 47762410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 846132 - 846177
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  846132 acgagtctttcttctttttctactcctttctgtccctttcgatttc 846177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 853509 - 853554
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  853509 acgagtctttcttctttttctactcctttctgtccctttcgatttc 853554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 1211513 - 1211558
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  1211513 acgagtctttcttctttttctactcctttctgtccctttcgatttc 1211558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 8954791 - 8954836
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  8954791 acgagtctttcttctttttctactcctttctgtccctttcgatttc 8954836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 14928157 - 14928198
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtcccttt 315  Q
    |||||||||| |||||||  ||||||||||||||||||||||    
T  14928157 ttaacgagtctttcttctttttctactcctttctgtcccttt 14928198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 15351623 - 15351664
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtcccttt 315  Q
    |||||||||| |||||||  ||||||||||||||||||||||    
T  15351623 ttaacgagtctttcttctttttctactcctttctgtcccttt 15351664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 36477547 - 36477502
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||| ||||||||    
T  36477547 acgagtctttcttctttttctactcctttctgtccctctcggtttc 36477502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 31030793 - 31030675
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  31030793 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctacgtaccgtattgaatagtttcaatcgaacgattaaac 31030694  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  31030693 tatatttcgaggtgtatat 31030675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 33616557 - 33616675
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  33616557 ttaacgagtcattcttctgcttctactcctttctgtccctttcagtttcgaatagagcggctacgtaccgtattgaatagatttaatcaaacgattaaac 33616656  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  33616657 tatatttcgaggtgtatat 33616675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 19430826 - 19430732
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 19430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 19436268 - 19436174
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 19436174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 19566975 - 19566881
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 19566881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 19572417 - 19572323
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 19572323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 19430276 - 19430161
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| | ||||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  19430276 ttaacgagtcattcttttccttctcctc--ttctgtccctttcggtttcgaatagaacggctacgtaccgtattgaatagttttaatcaaacgattaaac 19430179  T
Q  374 tatattttgaggtgtatat 392  Q
    |||| ||||||||||||||    
T  19430178 tata-tttgaggtgtatat 19430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 19435778 - 19435663
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| | ||||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  19435778 ttaacgagtcattcttttccttctcctc--ttctgtccctttcggtttcgaatagaacggctacgtaccgtattgaatagttttaatcaaacgattaaac 19435681  T
Q  374 tatattttgaggtgtatat 392  Q
    |||| ||||||||||||||    
T  19435680 tata-tttgaggtgtatat 19435663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 19566425 - 19566310
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| | ||||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  19566425 ttaacgagtcattcttttccttctcctc--ttctgtccctttcggtttcgaatagaacggctacgtaccgtattgaatagttttaatcaaacgattaaac 19566328  T
Q  374 tatattttgaggtgtatat 392  Q
    |||| ||||||||||||||    
T  19566327 tata-tttgaggtgtatat 19566310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 19571927 - 19571812
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| | ||||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  19571927 ttaacgagtcattcttttccttctcctc--ttctgtccctttcggtttcgaatagaacggctacgtaccgtattgaatagttttaatcaaacgattaaac 19571830  T
Q  374 tatattttgaggtgtatat 392  Q
    |||| ||||||||||||||    
T  19571829 tata-tttgaggtgtatat 19571812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 31031349 - 31031255
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  31031349 tgttggaacactagttaaatctaatgagaaaattggataagaaaaacacattataagaactagtgtgagtgtgtgacttaaaaatgtctcacatt 31031255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 13584564 - 13584500
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatg 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13584564 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatg 13584500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 33616064 - 33616158
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  33616064 tgttggaacattagttaaatctagtgagaaaattggataagaaaaatacaatataagaactagtgtgagtatgtggcttaaaaatgtctcacatt 33616158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 13584969 - 13584869
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataaga-----aaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 274  Q
    ||||||||||||||||| ||| |||||||||||||||||||||     |||||||||| |||||| ||||||||| |||||| |||||||||||||||||    
T  13584969 ctgttggaacactagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacat 13584870  T
Q  275 t 275  Q
    |    
T  13584869 t 13584869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 4582820 - 4582865
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  4582820 acgagtctttcttctttttctactcctttctgtccctttcggtttc 4582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 22104245 - 22104200
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  22104245 acgagtctttcttctttttctactcctttctgtccctttcgatttc 22104200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 16066762 - 16066790
Alignment:
Q  294 ttctactcctttctgtccctttcggtttc 322  Q
    |||||||||||||||||||||||||||||    
T  16066762 ttctactcctttctgtccctttcggtttc 16066790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 53119792 - 53119674
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53119792 ttaacgagtcgttcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaac 53119693  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||| ||||    
T  53119692 tatatttcgaggtgcatat 53119674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 33089174 - 33089292
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |    
T  33089174 ttaacgagtcaatcttctgcttctactcctttttgtccctttcggtttcgaatagagcggctacgtaccgtattgaatagttttaatcgaacgattaggc 33089273  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  33089274 tatatttagaggtgtatat 33089292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 20810636 - 20810518
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||||||| ||    
T  20810636 ttaacgagtcattcttctgcttctactcctttctgtccttttcggtttcgaatggagtggctacgtaccgtattcaatagttttaatcgaacgattagac 20810537  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  20810536 tatatttagaggtgtatat 20810518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 33088615 - 33088710
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33088615 ctgttggaacactagttaaatctagtgagaaaattggataagaaaaacataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 33088710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 13022842 - 13022748
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 13022748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 53120314 - 53120220
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 53120220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 38436789 - 38436907
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||  ||||||||||||||||| ||| ||||| ||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38436789 ttaacgagttgttcttctgcttctactcatttatgtccatttcaatttcaaatagagcggctacgtaccgtattgaatagttttaatcaaacgattaaac 38436888  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  38436889 tatatttcgaggtgtatat 38436907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 38436270 - 38436364
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38436270 tgttggagcaccagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacatt 38436364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 13022289 - 13022174
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||| |  |||| |||  |||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  13022289 ttaacgagtcattcttttctttctcctc--ttctgttcctttcggtttcgaatagaacggctacgtaccgtattgaatagttttaatcaaacgattaaac 13022192  T
Q  374 tatattttgaggtgtatat 392  Q
     ||| ||||||||||||||    
T  13022191 aata-tttgaggtgtatat 13022174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 20811177 - 20811111
Alignment:
Q  209 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20811177 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 20811111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 26962313 - 26962205
Alignment:
Q  285 ttcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactat-attttga 383  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||| || |||||||||||| | || |||||||||| ||||||| || |||||||    
T  26962313 ttcttctgcttctactcctttatctccctttcggtttcgaatatagcggttacgtaccgtattgagtggtcttaatcaaacaattaaaccataattttga 26962214  T
Q  384 ggtgtatat 392  Q
    |||||||||    
T  26962213 ggtgtatat 26962205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 26928858 - 26928762
Alignment:
Q  285 ttcttctgcttctactcctttctgtccctttcggtttcgaatagagcgg-ctatgtaccgtattgaatagttttaatcaaacgattaaactatatttt 381  Q
    |||||||||||||||| ||||||||||| |||||||||||  |||| || ||| ||||| |||||| | ||||||||||||||||||| | |||||||    
T  26928858 ttcttctgcttctacttctttctgtccc-ttcggtttcgataagagtggtctacgtaccatattgagtggttttaatcaaacgattaagccatatttt 26928762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 6025403 - 6025302
Alignment:
Q  293 cttctactcctttctgtccctttcggtttcgaatagagcgg-ctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtata 391  Q
    ||||||||||||| |||||||||||||||||| | ||| || ||| ||||| |||  ||| ||||||||  |||||||||   |||||||||||||||||    
T  6025403 cttctactcctttttgtccctttcggtttcgatttgagtggtctacgtaccatatataatggttttaattgaacgattaattcatattttgaggtgtata 6025304  T
Q  392 tt 393  Q
    ||    
T  6025303 tt 6025302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 18350299 - 18350344
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  18350299 acgagtctttcttctttttctactcctttctgtccctttcggtttc 18350344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 21494153 - 21494190
Alignment:
Q  287 cttctgcttctactcctttctgtccctttcggtttcga 324  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21494153 cttcttcttctactcctttctgtccctttcggtttcga 21494190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 11777324 - 11777273
Alignment:
Q  220 agaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||  |||||||||||||||    ||||||||||||||||||||||||    
T  11777324 agaaaaacacatggtaagaactagtgtg----tgtgacttaaaaatgtcccacatt 11777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 26929498 - 26929433
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtg 247  Q
    |||||||||| ||||| | | |||| | ||||||||||| |||||||| ||||||||||||||||||    
T  26929498 tgttggaacattagttaattctagtcaaaaaattggata-gaaaaacataatgtaagaactagtgtg 26929433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 8197022 - 8196977
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  8197022 acgagtctttcttctttttctactcctttctgtccctttcgatttc 8196977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 51922904 - 51922859
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  ||||| |||||||||||||||||||||||    
T  51922904 acgagtctttcttctttttctaatcctttctgtccctttcggtttc 51922859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 42914906 - 42914788
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||    
T  42914906 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctacataccgtattaaatagttttaatcgaacgattaaac 42914807  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||  |||||||||||    
T  42914806 tatattcagaggtgtatat 42914788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 5089542 - 5089424
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||| |||||||| ||    
T  5089542 ttaacgagtcattcttctgcttctactcctttctgtcccttttggtttctaatagagcggctacgtaccgtattgaatatttttaatcgaacgattagac 5089443  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  5089442 tatatttagaggtgtatat 5089424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 42915356 - 42915262
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 42915262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 5089873 - 5089777
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgactt-aaaaatgtcccacatt 275  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  5089873 ctgttgaaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacatt 5089777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 6856767 - 6856722
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  6856767 acgagtctttcttctttttctactcctttctgtccctttcggtttc 6856722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 42248797 - 42248752
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  42248797 acgagtctttcttctttttctactcctttctgtccctttcggtttc 42248752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 34069989 - 34069944
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||| ||||||||||||||||    
T  34069989 acgagtctttcttctttttctactcctttatgtccctttcggtttc 34069944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 19478931 - 19478837
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 19478837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 19478412 - 19478294
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| | ||    
T  19478412 ttaacgagtcattcttctacttctactcatttttgtccctttcggttttgaatagagcggctacgtaccgtattgaatagttttaatcgaacgatcagac 19478313  T
Q  374 tatattttgaggtgtatat 392  Q
    |||||||||||||||||||    
T  19478312 tatattttgaggtgtatat 19478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 17289607 - 17289698
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  17289607 tgttggaacactagttgaatctagtgagaaaattggat-agaaaaacacaatgtaagaactagtgt--gtgtgtgacttaaaaatgtcccacatt 17289698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 14450601 - 14450690
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14450601 tgttggaacactagttgaatgtagt-----aattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 14450690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 13604960 - 13605041
Alignment:
Q  311 cctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  13604960 cctttcagtttcgaatagagcagctacgtaccgtattgaatagttttaatcgaacgattagactatatttagaggtgtatat 13605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 277 - 393
Target Start/End: Complemental strand, 3902174 - 3902058
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactat 376  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||  |||| || |||||||| |||||| | ||||||||| || |||||| | ||    
T  3902174 acgagtcattcttctgcttctactcctttctgtccc-ttcagtttcgataagagtggttatgtaccatattgagtggttttaatcgaatgattaagccat 3902076  T
Q  377 a-ttttgaggtgtatatt 393  Q
    | ||||||||||||||||    
T  3902075 atttttgaggtgtatatt 3902058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 17281405 - 17281512
Alignment:
Q  285 ttcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgag 384  Q
    |||||||||||||||||||||||||| ||  ||||||||| | ||| || || ||||| |||||| | ||||||||||||||||||| | ||||||||||    
T  17281405 ttcttctgcttctactcctttctgtctctc-cggtttcgattcgagtggttacgtaccatattgagtggttttaatcaaacgattaatccatattttgag 17281503  T
Q  385 gtgtatatt 393  Q
    |||||||||    
T  17281504 gtgtatatt 17281512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 10485890 - 10485798
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||| ||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||    
T  10485890 tgttggaatactagttaaatctagtgagaaaaattggata-gaaaaacacaatgtaagaactagtgt--gtgtgagacttaaaaatgttccacatt 10485798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 393
Target Start/End: Complemental strand, 3902532 - 3902416
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactat 376  Q
    |||||||||||||||||||||||| |||| |||||| ||| |||||||  |||| || |||||||| |||||| | ||||||||| || |||||| | ||    
T  3902532 acgagtcattcttctgcttctacttctttttgtccc-ttcagtttcgataagagtggttatgtaccatattgagtggttttaatcgaatgattaagccat 3902434  T
Q  377 a-ttttgaggtgtatatt 393  Q
    | ||||||||||||||||    
T  3902433 atttttgaggtgtatatt 3902416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 17280865 - 17280943
Alignment:
Q  184 tggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgt 267  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||    |||||||||||||||||||    
T  17280865 tggaacattagttgaatctagtgagaaaattggat-agaaaaatagaatgtaagaactagt----gtgtgtgacttaaaaatgt 17280943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 31475871 - 31475954
Alignment:
Q  309 tccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||   | ||||||| ||||||||||||||||||    
T  31475871 tccctttcggtttcgaatagagcggttacgtaccgtactgagtggctttaatcgttcaattaaaccatattttgaggtgtatat 31475954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 31495707 - 31495790
Alignment:
Q  309 tccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||||||||||||||| ||||||||||  ||| | | |||||||   | ||||||| ||||||||||||||||||    
T  31495707 tccctttcggtttcgaatagagcggttatgtaccgtcctgagtggctttaatcgttcaattaaaccatattttgaggtgtatat 31495790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 31501093 - 31501176
Alignment:
Q  309 tccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||||||||||||||| ||||||||||  ||| | | |||||||   | ||||||| ||||||||||||||||||    
T  31501093 tccctttcggtttcgaatagagcggttatgtaccgtcctgagtggctttaatcgttcaattaaaccatattttgaggtgtatat 31501176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 31515590 - 31515680
Alignment:
Q  302 ctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||  ||| | | |||||||   | ||||||| ||||||||||||||||||    
T  31515590 ctttccgtcccttttggtttcgaatagagcggttatgtaccgtcctgagtggctttaatcgttcaattaaaccatattttgaggtgtatat 31515680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 26981165 - 26981120
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  26981165 acgagtctttcttctctttctactcctttctgtccctttcggtttc 26981120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 29325797 - 29325760
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctt 314  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29325797 acgagtccttcttctgcttctactcctttctgtccctt 29325760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 27073553 - 27073510
Alignment:
Q  279 gagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  27073553 gagtctttcttctttttctactcctttctgtccctttcggtttc 27073510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 29326383 - 29326295
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| | | |||||| ||| ||||||| ||||||||| ||||||||| ||||||| |||    ||||||||||||| ||||||    
T  29326383 tgttggaacactagttaattctagtga-aaagttggata-gaaaaacactatgtaagaattagtgtgcgtg----acttaaaaatgtctcacatt 29326295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 18387502 - 18387462
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcg 317  Q
    ||||||| |||||||  ||||||||||||||||||||||||    
T  18387502 acgagtctttcttctttttctactcctttctgtccctttcg 18387462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 10120640 - 10120758
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||    
T  10120640 ttaacgagtcattcttctgcttctactactttctatccctttcggtttcgaatagagcggctacgtaccgtattgaatagttctaatctaacgattagac 10120739  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  10120740 tatatttagaggtgtatat 10120758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 10119806 - 10119900
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10119806 tgttggaacactagttgaatctcgtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 10119900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 393
Target Start/End: Original strand, 8082773 - 8082976
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattaacga 280  Q
    |||||||||||||||| | | |||||| ||| ||||||| ||||||||| |||||||||||||||      ||||||||||||||| ||||||||   ||    
T  8082773 tgttggaacactagttaattctagtga-aaagttggata-gaaaaacactatgtaagaactagtg------tgtgacttaaaaatgccccacattggtga 8082864  T
Q  281 gtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattt 380  Q
    ||| |||||||||||||||||| ||||||||||||| ||||||| | ||| || || ||||| |||||| | || |||||| |||||| || | ||||||    
T  8082865 gtccttcttctgcttctactcccttctgtccctttcagtttcgattcgagtggttacgtaccatattgagtggtattaatc-aacgatcaagccatattt 8082963  T
Q  381 tgaggtgtatatt 393  Q
    |||||||||||||    
T  8082964 tgaggtgtatatt 8082976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 24490296 - 24490178
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||| || || ||||| | |||| | ||||||||||||| ||||| |    
T  24490296 ttaacgagtcattcttctgcttctactcctttatgtccc-ttcggtttcgattcgagtggttacgtaccattttgagtggttttaatcaaactattaagc 24490198  T
Q  374 tatattttgaggtgtatatt 393  Q
     |||||||||||||||||||    
T  24490197 catattttgaggtgtatatt 24490178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 24490882 - 24490797
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtccca 271  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    |||||| ||||||||||||||||    
T  24490882 tgttggaacactagttaaatctagtgagaaaattggat-agaaaaacacaatgtaagaactagt----gtgtgtaacttaaaaatgtccca 24490797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 653783 - 653687
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaa-aaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||| || ||| |  ||||||||||||||  | ||||||||||||||||||||||||    
T  653783 ctgttggaacactagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacatt 653687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 10120412 - 10120460
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  10120412 ttaacgagtcattcttctgcttctactactttctatccctttcggtttc 10120460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 653277 - 653190
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattg-aatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||| ||||| || ||| ||| || ||||||||||| ||||| | ||||| ||||||||||||||| ||||||||||||||    
T  653277 ttctgtccctttcagtttcaaacagaacggttacgtaccgtattgaaatag-tataatcgaacgattaaactata-tttgaggtgtatat 653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 393
Target Start/End: Original strand, 10318614 - 10318729
Alignment:
Q  279 gagtcattcttctgcttctactcctttctgtccctttcggtttcga-atagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactata 377  Q
    ||||| |||||||||||||||| ||||||||||| |||| |||||| | |||| ||  ||||||| |||||| | ||||||||| || |||| | | |||    
T  10318614 gagtccttcttctgcttctactactttctgtccc-ttcgatttcgataaagagtggtcatgtaccatattgagtggttttaatcgaatgattgagccata 10318712  T
Q  378 -ttttgaggtgtatatt 393  Q
     ||||||||||||||||    
T  10318713 tttttgaggtgtatatt 10318729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 9185208 - 9185253
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  ||||||| |||||||||||||||||||||    
T  9185208 acgagtctttcttctttttctacttctttctgtccctttcggtttc 9185253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 9191073 - 9191118
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  ||||||| |||||||||||||||||||||    
T  9191073 acgagtctttcttctttttctacttctttctgtccctttcggtttc 9191118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 2421 - 2515
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 2515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 10381 - 10475
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 10475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 24820 - 24865
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  ||||||| |||||||||||||||||||||    
T  24820 acgagtctttcttctttttctacttctttctgtccctttcggtttc 24865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 7311 - 7193
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |  |||| |||||||||||||||||||||||||||||||    
T  7311 ttaacaagtcgttcttctgcttctactcttttctgtccctttcggtttcgattagagcggatgcgtactgtattgaatagttttaatcaaacgattaaac 7212  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  7211 tatatttcgaggtgtatat 7193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 2420 - 2325
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgactta-aaaatgtcccacatt 275  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacatt 2325  T

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Target: scaffold0011; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 7674 - 7579
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgactta-aaaatgtcccacatt 275  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacatt 7579  T

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Target: scaffold0011; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 1830 - 1712
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaac 373  Q
    ||||| |||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||  |||  ||||||| |||||||||||||||||||||||    
T  1830 ttaacaagtcgttcttctacttctgctcctttctgtccctttcggtttcgattagagcggctgcgtattgtattgagtagttttaatcaaacgattaaac 1731  T
Q  374 tatattttgaggtgtatat 392  Q
    ||||||| |||||||||||    
T  1730 tatatttcgaggtgtatat 1712  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 392
Target Start/End: Original strand, 24435700 - 24435817
Alignment:
Q  273 attaacgagtcattcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaa 372  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||| | ||||||||||||||||    
T  24435700 attaaagagtcattcttctgcttctactcctttctgtccctttcgatttcaaacagagcggctacgtaccgtattgaatag-tctaatcaaacgattaaa 24435798  T
Q  373 ctatattttgaggtgtatat 392  Q
    ||||| ||||||||||||||    
T  24435799 ctata-tttgaggtgtatat 24435817  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 7805304 - 7805218
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    ||||||||||||||||||| || ||| |||||  |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  7805304 ttctgtccctttcggtttcaaacagaacggcttcgtaccgtattgaatag-tttaatcaaacgattaaactata-tttgaggtgtatat 7805218  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 14374368 - 14374282
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    |||||||||||||||||||  | ||| |||||  |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  14374368 ttctgtccctttcggtttcatacagaacggcttcgtaccgtattgaatag-tttaatcaaacgattaaactata-tttgaggtgtatat 14374282  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 13581981 - 13582076
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaa-aaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| || ||| |  ||||||||||||||  | ||||||||||||||||||||||||    
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacatt 13582076  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 14374917 - 14374823
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||||||||||| ||| |||||||||  |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||    
T  14374917 tgttggaacactagttcaatctagtgagaagtttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacatt 14374823  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 21826793 - 21826748
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  21826793 acgagtctttcttctttttctactcctttctgtccctttcggtttc 21826748  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 41096968 - 41096923
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  41096968 acgagtctttcttctttttctactcctttctgtccctttcggtttc 41096923  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 7805868 - 7805772
Alignment:
Q  180 ctgttggaacactagttgaatttagtgagaaaattggataagaaaaac-acaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    ||||||||||||||||| ||| ||||||||||||||  | || | ||  || |  || |||||||||||  ||||||||||||||||||||||||||    
T  7805868 ctgttggaacactagttcaatctagtgagaaaattgattgaggataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacatt 7805772  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 13582551 - 13582638
Alignment:
Q  304 ttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaa-tagttttaatcaaacgattaaactatattttgaggtgtatat 392  Q
    |||||||||||||||||||  | ||| ||| || |||| |||||||| |||| | |||| ||||||||||||||| ||||||||||||||    
T  13582551 ttctgtccctttcggtttcatacagaacggttacgtacagtattgaaatagtat-aatcgaacgattaaactata-tttgaggtgtatat 13582638  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 26869838 - 26869883
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  26869838 acgagtctttcttctttttctactcctttctgtccctttcgatttc 26869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 33305 - 33393
Alignment:
Q  181 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 275  Q
    |||||||| ||||||| | | |||||| ||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  33305 tgttggaatactagttaattctagtga-aaaattggata-gaaaaacacaatgtaagaactagt----gtgtgtgacttaaaaatgtcccacatt 33393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 33810 - 33918
Alignment:
Q  285 ttcttctgcttctactcctttctgtccctttcggtttcgaatagagcggctatgtaccgtattgaatagttttaatcaaacgattaaactata-ttttga 383  Q
    ||||||||||||| ||||||| |||||| |||||||||||  |||| ||  | ||||| |||||| | ||||||||| ||||||||| | ||| |||| |    
T  33810 ttcttctgcttctgctcctttttgtccc-ttcggtttcgataagagtggtcacgtaccatattgagtggttttaatcgaacgattaagccatatttttta 33908  T
Q  384 ggtgtatatt 393  Q
    ||||||||||    
T  33909 ggtgtatatt 33918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 268 - 223
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  268 acgagtctttcttctttttctactcctttctgtccctttcggtttc 223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 64730 - 64685
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||    
T  64730 acgagtctttcttctttttctactcctttctgtccctttcggtttc 64685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 436 - 392
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggttt 321  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||    
T  436 acgagtctttcttctttttctactcctttctgtccctttcggttt 392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 3871 - 3916
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  3871 acgagtctttcttctttttctactcctttctgtccctttcgatttc 3916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 193791 - 193836
Alignment:
Q  277 acgagtcattcttctgcttctactcctttctgtccctttcggtttc 322  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  193791 acgagtctttcttctttttctactcctttctgtccctttcgatttc 193836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 30840 - 30800
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctt 314  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  30840 ttaacgagtctttcttctttttctactcctttctgtccctt 30800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 30257 - 30217
Alignment:
Q  274 ttaacgagtcattcttctgcttctactcctttctgtccctt 314  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  30257 ttaacgagtctttcttctttttctactcctttctgtccctt 30217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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