View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_11 (Length: 384)
Name: NF18240_low_11
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 43570098 - 43570496
Alignment:
| Q |
1 |
ctctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcgaacctccataagctcgacaaattttgtttaatgttgaattgattga |
100 |
Q |
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| T |
43570098 |
ctctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcgaacctccataagctcgacaaattttctttaatgttgaattgattga |
43570197 |
T |
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| Q |
101 |
gtctcccattaccatcatccacacnnnnnnnnnnntatatacattttaagtatgtgacattaggggacaatctccactaaattttctcacaaccttgtct |
200 |
Q |
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| T |
43570198 |
gtctcccattaccatcatccacacaaaaaaaaaa--aaatacattttaagtatgtgtcattagggtacaatctccactaaattttctcacaaccttgtct |
43570295 |
T |
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| Q |
201 |
caca------nnnnnnnnnatcttttctaggatatgtattagttaagtata----------ttgcatgtatttgtgagtcatcctgtaaatgtttgataa |
284 |
Q |
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| T |
43570296 |
cacatttttttttatcttcatcttttctaggatatgtatcagttaagtatattgtatgtatttgcatgtatttgtgagtcatcctgtaaatgtttgataa |
43570395 |
T |
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| Q |
285 |
aatatttttt-nnnnnnnnnnnnnnnttaattatgatacttcttaggtgcgtatccgcaagtatccgtatctaatatgaatacgtctatattttgcatga |
383 |
Q |
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| T |
43570396 |
aatattttttaaaaacaaaaaaaaaattaattatgatacttcttaggtgtgtatccgcaagtatccgtacctaatatgaatacgtctatatttcgcatga |
43570495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43560815 - 43560884
Alignment:
| Q |
1 |
ctctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcgaacctccataagctcg |
70 |
Q |
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| T |
43560815 |
ctctaaagaagccagtttggctctagcctttagagcttctttcaagttcgagcgaacctccataagctcg |
43560884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17730345 - 17730276
Alignment:
| Q |
1 |
ctctaaagaagccagtttggctctggcctttagagcatctttcaacttcgagcgaacctccataagctcg |
70 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||| |
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| T |
17730345 |
ctctaaagaagccagtttggctctggcctttagagcttccttcaagtttgagcgaacctccataagctcg |
17730276 |
T |
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