View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_low_18 (Length: 292)
Name: NF18240_low_18
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 52478394 - 52478271
Alignment:
| Q |
143 |
tatacaatgaggcacccaccaagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcacc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52478394 |
tatacaatgaggcacccaccaagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcacc |
52478295 |
T |
|
| Q |
243 |
gttataattaacttatacaaataa |
266 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
52478294 |
gttataatttacttatacaaataa |
52478271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 52478499 - 52478421
Alignment:
| Q |
68 |
catttgacgattaccacagttgaatgatgttaagtacacataaaaatccaactgagaacttgggcattgataccatata |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52478499 |
catttgacgattaccacagttgaatgatgttaagtacacataaaaatccaactgagaacttgggcattgataccatata |
52478421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 52478569 - 52478523
Alignment:
| Q |
18 |
catcccactaccatactcggttgacaaaggaagcctcatttatgcta |
64 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
52478569 |
catcccactaccatactcggttcacaaaggaagcctaatgtatgcta |
52478523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University