View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_2 (Length: 778)
Name: NF18240_low_2
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 7908810 - 7909189
Alignment:
| Q |
15 |
cagagacggtgtagaaagaaaaagattatagaaaatataagcatttctaaccagtgcaagtttcttataagcattccttagctctgaatcagagcattcc |
114 |
Q |
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| T |
7908810 |
cagagacggtgtagaaagaaaaagattatagaaagtataagcatttctaaccagtgcaagtttcttataagcattccttagctctgaatcagagcattcc |
7908909 |
T |
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| Q |
115 |
ttattcaatcccaaaactgcatagaaatcattgcttttgtttccttcgttagccatattatttccaacaagaacaatccaaattttcacaaccaactaga |
214 |
Q |
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| T |
7908910 |
ttattcaatcccaaaactgcatagaaatcattgcttttgtttccttcgttagccatattatttccaacaagaacaatccaaattttcacaaccaactaga |
7909009 |
T |
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| Q |
215 |
tcaaccaaccaaactagaattctccaacagaaccaatcaaatatcaaactaatgttttttgtattgtcggcaaattgaatcaaacaaactcaatcaaaaa |
314 |
Q |
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| T |
7909010 |
tcaaccaaccaaactagaattctccaacagaaccaatcaaatatcaaactaatgttttttgtattgtcggcaaattgaatcaaacaaactcaatcaaaac |
7909109 |
T |
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| Q |
315 |
acaaaatccgtacaaccataaaagtaagaaactaaattctaagagacatacatacaatcacaataacattactatgtgat |
394 |
Q |
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| T |
7909110 |
acaaaatccgtacaaccataaaagtaagaaactaaattctaagagacatacatacaatcacaataacattactatgtgat |
7909189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 425 - 574
Target Start/End: Original strand, 7909220 - 7909369
Alignment:
| Q |
425 |
caacttggatgacaacttgagttgcggctacatgtttgtgaatagatacatagtacttagcattttgttttgttttagactagatggaatgaagggttga |
524 |
Q |
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| T |
7909220 |
caacttggatgacaacttgagttgcggctacatgtttgtgaatagatacatagtacttagcattttgttttgttttagactagatggaatgaagggttga |
7909319 |
T |
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| Q |
525 |
agtgtaaagacttagcctcatgaatactctagagacctctaatactagac |
574 |
Q |
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| T |
7909320 |
agtgtaaagacttagcctcatgaatactctagagacctctaatactagac |
7909369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 614 - 761
Target Start/End: Original strand, 7909409 - 7909557
Alignment:
| Q |
614 |
aaagatgcacaaacaaccattttggtcaataaatatgtgagacgctctcattatagtattgaaacgtatcaaaattacaaaaagtatactaaaatatgtc |
713 |
Q |
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| T |
7909409 |
aaagatgcacaaacaaccattttggtcaatgaatatgtgagacgatgttactatagtattgaaatgtatcaaaattacaaaaagtatactaaaatatgtc |
7909508 |
T |
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| Q |
714 |
a-nnnnnnnnattgacattagtatggatataaactccgattgtttaact |
761 |
Q |
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| T |
7909509 |
atttttttttattgacattagtttggacataaactccgatcgtttaact |
7909557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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