View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_20 (Length: 286)
Name: NF18240_low_20
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 4330861 - 4330605
Alignment:
| Q |
17 |
agaaagcttgagagcttgatgacgaggaatactctaaggtatcatcatattcaaagatgcaaaactgaacagatacaagcttatttataggagcacgtaa |
116 |
Q |
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| T |
4330861 |
agaaagcttgagagcttgatgacgaggaatactctaaggtatcatcatattcaaagatgcaaaactgaacagatacaagcttatttataggagcacgtaa |
4330762 |
T |
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| Q |
117 |
gtaactatctgagtaacaagctgattataactcaattgctagctgaatccatttctctaataaacacaaaacgctataatttttacaatagaagtgcatg |
216 |
Q |
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| T |
4330761 |
gtaactatctgagtaacaagctgattataactcaattgctagctgaatccatttctctaataaacacaaaacgctataatttttacaatagaagtgcatg |
4330662 |
T |
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| Q |
217 |
gataacataacaaatcacattttgaataacaatatcctcaaccttaagggcacaggt |
273 |
Q |
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| T |
4330661 |
gataacataacaaatcacattttgaataacaatatcctcaaccttaagggcacaggt |
4330605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 4338863 - 4338829
Alignment:
| Q |
219 |
taacataacaaatcacattttgaataacaatatcc |
253 |
Q |
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| T |
4338863 |
taacataacaaatcacatcttgaataacaatatcc |
4338829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 4338923 - 4338878
Alignment:
| Q |
65 |
attcaaagatgcaaaactgaacagatacaagcttatttataggagca |
111 |
Q |
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| T |
4338923 |
attcaaagatacaaaattgaacagata-aagcttatttataggagca |
4338878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 4364903 - 4364810
Alignment:
| Q |
21 |
agcttgagagcttgatgacgaggaatactctaagg-tatcatcat-attcaaagatgcaaaa-ctgaacagatacaagcttatttataggagca |
111 |
Q |
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| T |
4364903 |
agcttgagagcttgacgatgaaaaatactaaaaggatatcattatgattcaaagatacaaaaactgaacatatacaagcttacttataggagca |
4364810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 4130762 - 4130806
Alignment:
| Q |
66 |
ttcaaagatgcaaaactgaac-agatacaagcttatttataggag |
109 |
Q |
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| T |
4130762 |
ttcaaagatacaaaactgaaagagatacaagcttatttataggag |
4130806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 17779799 - 17779856
Alignment:
| Q |
17 |
agaaagcttgagagcttgatgacgaggaatactctaaggtatcatcat-attcaaaga |
73 |
Q |
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| T |
17779799 |
agaaagcttgagaacttgatgatgaggaatactcgaaggtatcattatgattcaaaga |
17779856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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