View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_low_21 (Length: 250)
Name: NF18240_low_21
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 10462964 - 10462859
Alignment:
| Q |
134 |
tatttagactccttaatttattggaagagattgaccttgtaaatgtatctcaattaactcgaaagggttaaactccatagttaaacacggagccagagat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10462964 |
tatttagactccttaatttattggaagagattgaccttgtaaatgtatctcaattaactcgaaa-ggttaaactccatagttaaacacggagccagagat |
10462866 |
T |
|
| Q |
234 |
acctttg |
240 |
Q |
| |
|
| ||||| |
|
|
| T |
10462865 |
atctttg |
10462859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10468139 - 10468081
Alignment:
| Q |
1 |
tcagcatactgtgtagaaaaatacctgtatataaagggatattaagtttcgatgtaggg |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468139 |
tcagcatactgtgtagaaaaatacctgtatataaagggatattaagtttcgatgtaggg |
10468081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University