View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18240_low_29 (Length: 216)

Name: NF18240_low_29
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18240_low_29
NF18240_low_29
[»] chr3 (6 HSPs)
chr3 (13-216)||(35928914-35929117)
chr3 (8-182)||(35941096-35941270)
chr3 (8-182)||(35911575-35911749)
chr3 (12-182)||(35915966-35916136)
chr3 (10-182)||(35922233-35922405)
chr3 (10-182)||(35935548-35935720)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 35928914 - 35929117
Alignment:
Q  13 actaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattgat 112  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||| |    
T  35928914 actaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagctctcttccagcctcaggattaacagtgacatagcctgaatattggt 35929013  T
Q  113 caaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgaggcgtaacataaggagcagaagaatctgtttt 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929014 caaaattcactccatatggttgaccaggcaatgtgtcaatcttgtcagcttgccttagcccctcttgaggcgtaacataaggagcagaagaatctgtttt 35929113  T
Q  213 agat 216  Q
    ||||    
T  35929114 agat 35929117  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 35941096 - 35941270
Alignment:
Q  8 ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35941096 ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata 35941195  T
Q  108 ttgatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg 182  Q
    ||| ||||||||||||||||| |||||||||||||||||  | |||||||||||| | |||||| ||||||||||    
T  35941196 ttggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg 35941270  T

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Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 35911575 - 35911749
Alignment:
Q  8 ataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaata 107  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  35911575 ataatactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctctaccagcctcaggatcaactgtgacatagcctgaata 35911674  T
Q  108 ttgatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg 182  Q
    ||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35911675 ttggtcaaaatttaccccatagggttgaccaggcaatgtgtcaatcttgtcagcttgcattagcccctcttgagg 35911749  T

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Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 35915966 - 35916136
Alignment:
Q  12 tactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatattga 111  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  35915966 tactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattgg 35916065  T
Q  112 tcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg 182  Q
    |||||||| |||||||| |||||||||||||||||  | |||||||| ||| | |||||| ||||||||||    
T  35916066 tcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctcttgagg 35916136  T

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Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 35922233 - 35922405
Alignment:
Q  10 aatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatatt 109  Q
    |||| ||| ||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35922233 aatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatatt 35922332  T
Q  110 gatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg 182  Q
    | ||||||||||||||||| |||||||||||||||||  | |||||||||||| | |||||| ||||||||||    
T  35922333 ggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg 35922405  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 35935548 - 35935720
Alignment:
Q  10 aatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaactgtgacatagcctgaatatt 109  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| | |||||| ||||| || ||||| || || ||||    
T  35935548 aatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgctcttccggcctcaggttcaacagtcacataaccagagtatt 35935647  T
Q  110 gatcaaaattcactccatatggttgaccaggcaatgtatcaatcttgtcagcttgccttagcccctcttgagg 182  Q
    | |||||||  || ||||  |||||||||||||||||  | |||||||||||| | |||||| ||||||||||    
T  35935648 ggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctcttgagg 35935720  T

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