View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18240_low_3 (Length: 721)

Name: NF18240_low_3
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18240_low_3
NF18240_low_3
[»] chr1 (10 HSPs)
chr1 (323-706)||(37267634-37268017)
chr1 (19-322)||(37268050-37268353)
chr1 (218-287)||(8934590-8934659)
chr1 (58-115)||(19764486-19764543)
chr1 (208-285)||(9882655-9882733)
chr1 (217-271)||(18610780-18610834)
chr1 (217-286)||(26585168-26585237)
chr1 (217-289)||(50226871-50226943)
chr1 (217-287)||(49425745-49425814)
chr1 (217-295)||(49596242-49596320)
[»] scaffold0291 (1 HSPs)
scaffold0291 (218-291)||(20077-20150)
[»] chr7 (13 HSPs)
chr7 (58-115)||(11621701-11621758)
chr7 (217-291)||(4971297-4971371)
chr7 (217-287)||(7807062-7807132)
chr7 (217-284)||(1789998-1790065)
chr7 (217-287)||(13437205-13437275)
chr7 (217-287)||(19426587-19426657)
chr7 (217-287)||(26153653-26153722)
chr7 (217-287)||(28548215-28548285)
chr7 (217-291)||(37385223-37385297)
chr7 (217-287)||(37969938-37970008)
chr7 (326-363)||(10591290-10591327)
chr7 (217-286)||(20406548-20406617)
chr7 (217-286)||(33050190-33050259)
[»] chr4 (13 HSPs)
chr4 (58-115)||(2623742-2623799)
chr4 (217-278)||(10994155-10994216)
chr4 (217-270)||(35017160-35017213)
chr4 (323-363)||(55927119-55927159)
chr4 (217-295)||(30250286-30250364)
chr4 (217-287)||(12241065-12241135)
chr4 (217-287)||(29577430-29577500)
chr4 (217-287)||(33820330-33820400)
chr4 (217-287)||(39449180-39449249)
chr4 (217-291)||(43864041-43864114)
chr4 (217-287)||(53662422-53662492)
chr4 (217-287)||(54803322-54803392)
chr4 (246-287)||(18499941-18499982)
[»] chr8 (8 HSPs)
chr8 (217-287)||(14228714-14228784)
chr8 (217-283)||(40719641-40719707)
chr8 (217-293)||(43873679-43873755)
chr8 (217-287)||(6161955-6162025)
chr8 (217-291)||(21273700-21273774)
chr8 (217-287)||(37562135-37562205)
chr8 (217-283)||(44380612-44380678)
chr8 (326-363)||(23258170-23258207)
[»] chr5 (7 HSPs)
chr5 (217-291)||(1107988-1108062)
chr5 (217-287)||(3771000-3771070)
chr5 (217-287)||(8897389-8897459)
chr5 (217-291)||(12401199-12401273)
chr5 (217-287)||(12779600-12779670)
chr5 (217-287)||(36572698-36572768)
chr5 (218-291)||(22920482-22920555)
[»] chr3 (12 HSPs)
chr3 (58-111)||(13622709-13622762)
chr3 (58-115)||(39749064-39749121)
chr3 (217-285)||(1295339-1295407)
chr3 (217-285)||(7867707-7867775)
chr3 (217-284)||(31206848-31206915)
chr3 (58-116)||(4615996-4616054)
chr3 (217-287)||(41877605-41877675)
chr3 (217-287)||(47988479-47988549)
chr3 (217-287)||(47997766-47997836)
chr3 (217-287)||(48007053-48007123)
chr3 (217-286)||(11327115-11327184)
chr3 (326-363)||(49130992-49131029)
[»] chr2 (8 HSPs)
chr2 (220-287)||(39229695-39229762)
chr2 (217-287)||(2308316-2308386)
chr2 (217-287)||(11980658-11980728)
chr2 (217-287)||(14140331-14140401)
chr2 (217-291)||(31635800-31635874)
chr2 (217-291)||(36383469-36383543)
chr2 (217-291)||(44484646-44484720)
chr2 (326-363)||(14714124-14714161)
[»] chr6 (5 HSPs)
chr6 (217-287)||(11785362-11785432)
chr6 (217-287)||(21506343-21506413)
chr6 (217-278)||(25554252-25554313)
chr6 (217-286)||(27334865-27334934)
chr6 (217-286)||(27395605-27395674)
[»] scaffold0592 (1 HSPs)
scaffold0592 (218-287)||(8301-8370)
[»] scaffold0006 (1 HSPs)
scaffold0006 (218-287)||(278434-278503)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 323 - 706
Target Start/End: Complemental strand, 37268017 - 37267634
Alignment:
Q  323 aaattgtcacaaaaattgtctcaaatggttgctcaaatatccctgctattaatcgcttaacgttgagtaatgttaggggtgctagttttaacttttaatc 422  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  37268017 aaattgtcacaagaattatctcaaatggttgctcaaatatcactgctattaattgcttagcgttgagtaatgttaggggtgctagttttaacttttaatc 37267918  T
Q  423 gcgtgtttttccttattacacagcatttaccctaaaaaatgggtcatttcaagataaaattcaaaaggggtcaaataaaagaaagaatgtctattttccc 522  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37267917 tcgtgtttttccttattacacagcatttaccctaaaaaatgggtcatttcaagataaaattcaaaaggggtcaaataaaagaaagaatgtctattttccc 37267818  T
Q  523 ttaaagaaataatgtatttgcatgaattgaaaacgtttataannnnnnnngtgactgaaatgaagacatatttataccatattttattggcaaataattt 622  Q
    ||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37267817 ttaaagaaataatgtatgtgcatgaattgaaaacgtttataattttttttgtgactgaaatgaagatatatttataccatattttattggcaaataattt 37267718  T
Q  623 tccctacataagttaatcacctactatatggtgaaaccttttcacgatggaagttgaagttttttcatacatccaacacctatg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37267717 tccctacataagttaatcacctactatatggtgaaaccttttcacgatggaagttgaagttttttcatacatccaacacctatg 37267634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 37268353 - 37268050
Alignment:
Q  19 tacctcttatttccattggaaataaaagagtcccacctcttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaaaat 118  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268353 tacctcttattcccagtggaaataaaagagtcccaccccttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaaaat 37268254  T
Q  119 gtatccaaacataatttatgaaaaattgaagcaagcatgataaccaaacattttgttgtgtgagtattgtgttctttaaatgtttaattgctaagaaaga 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268253 gtatctaaacataatttatgaaaaattgaagcaagcatgataaccaaacattttgttgtgtgagtattgtgttctttaaatgtttaattgctaagaaaga 37268154  T
Q  219 tatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatctttttgagaaaatgttcttattatgttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268153 tatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatctttttgagaaaatgttcttattatgttt 37268054  T
Q  319 cttc 322  Q
    ||||    
T  37268053 cttc 37268050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 8934659 - 8934590
Alignment:
Q  218 atatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||||||||||||||||||||||  |||| |||||||||| |||||||||   || |||||||||||    
T  8934659 atatttgtacaactattttgtgacaactttttgacaactatttctctcatacttaaataatgttcttatt 8934590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 19764486 - 19764543
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaa 115  Q
    |||||||||||||||||| | ||||||| || ||||||||||||| ||||||||||||    
T  19764486 ttaacatgggaataacaaatggaaaaattatgtgtaaattttattcctaggaataaaa 19764543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 9882733 - 9882655
Alignment:
Q  208 gctaagaaa-gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttctta 285  Q
    ||||||||| |||||||||||||||||||||||||||  |||| |||||| | | ||||||| ||  ||||||||||||    
T  9882733 gctaagaaatgatatttgtacaactattttgtgacaacattttgacaactttatctctcatattcatattatgttctta 9882655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 18610780 - 18610834
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactc 271  Q
    |||||||||||||||||||||||||||  ||||||||||| | | ||||||||||    
T  18610780 gatatttgtacaactattttgtgacaacttttttacaactttctctctcatactc 18610834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 26585237 - 26585168
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||||||||||||| ||  ||| ||||||| ||| ||||||| |||||| ||| ||||||    
T  26585237 gatatttgtacaactattttgtgataacttttgtacaactttttctctcataatcgcatgatggtcttat 26585168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 50226943 - 50226871
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattat 289  Q
    |||||||||||||| | ||||||||||  |||| |||||| | | |||||||||||||||||  |||||||||    
T  50226943 gatatttgtacaaccactttgtgacaactttttgacaactttctctctcatactcgcattatactcttattat 50226871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 49425745 - 49425814
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| | |||||||| ||||||| |||||| | | |||||||||| |||||| ||||||||    
T  49425745 gatatttgtacaaccactttgtgac-aacttttgacaactttatctctcatactcacattattttcttatt 49425814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 49596242 - 49596320
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatcttttt 295  Q
    |||||||||||||| ||||| | ||||  |||| |||||| | | |||||||||| |||||| |||||||| |||||||    
T  49596242 gatatttgtacaaccattttattacaattttttgacaactttctctctcatactcacattatattcttattctcttttt 49596320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 20077 - 20150
Alignment:
Q  218 atatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||| |||||| ||||||| | ||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  20077 atatttttacaaccattttgtaataattttttgacaactatttttcttatactcgcattatgttcttattatct 20150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 11621701 - 11621758
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaa 115  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||||| ||||||||||||    
T  11621701 ttaacatggaaataacaagtggaaaagtcatgtgtaaattttattcctaggaataaaa 11621758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 4971297 - 4971371
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||| ||||||||||||  ||| ||||||| | | |||||||||| |||||| |||||| |||||    
T  4971297 gatatttgtacaaccattttgtgacaacttttatacaactttctctctcatactcacattatattcttactatct 4971371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 7807062 - 7807132
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||| | ||||||||| ||| ||||||||||| ||| |||||||||| ||||||  |||||||    
T  7807062 gatatttgtacacccattttgtgataaattttttacaactttttctctcatactcacattattctcttatt 7807132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 1789998 - 1790065
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttctt 284  Q
    ||||||||||||||||||||| |||||  |||| |||||| | | |||||||||| ||| ||||||||    
T  1789998 gatatttgtacaactattttgcgacaactttttgacaactttctctctcatactcacatgatgttctt 1790065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 13437205 - 13437275
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||| ||||| ||||||||||||  |||  |||||| ||| |||||||||| |||| ||||||||||    
T  13437205 gatatttgcacaaccattttgtgacaacttttgaacaactttttctctcatactcacattgtgttcttatt 13437275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 19426587 - 19426657
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||||||||||  |||| |||||| | | |||||||||| ||||||  |||||||    
T  19426587 gatatttgtacaaccattttgtgacaactttttgacaactttctctctcatactcacattatcctcttatt 19426657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 26153653 - 26153722
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| |||| ||||||| |||| | | | |||||||||| |||||| ||||||||    
T  26153653 gatatttgtacaactattttatgac-aacttttgacaattttctctctcatactcacattatattcttatt 26153722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 28548285 - 28548215
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||||  ||||  ||| ||||||| | | |||||||||| ||||||||| |||||    
T  28548285 gatatttgtacaactattttggtacaacttttgtacaactttctctctcatactcacattatgtttttatt 28548215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 37385297 - 37385223
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||||||||| ||||||  ||| ||||||| | | |||||||||| ||| |  ||||||||||||    
T  37385297 gatatttgtacaactattttttgacaacttttgtacaactttctctctcatactcacatgacattcttattatct 37385223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 37969938 - 37970008
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||||  ||||  ||| ||||||| | | |||||||||| ||||||||| |||||    
T  37969938 gatatttgtacaactattttgatacaacttttgtacaactttctctctcatactcacattatgtttttatt 37970008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 10591290 - 10591327
Alignment:
Q  326 ttgtcacaaaaattgtctcaaatggttgctcaaatatc 363  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  10591290 ttgtcacaaaagttgtctcaaatggttgttcaaatatc 10591327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 20406548 - 20406617
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||| || |||||||||  |||| |||||| | |||||||||||| ||| ||||| ||||    
T  20406548 gatatttgtacaaccatcttgtgacaactttttgacaactttctttctcatactcacatgatgtttttat 20406617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 33050190 - 33050259
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||| ||||||||||||  ||| ||||||| | | |||||||||| ||| ||| ||||||    
T  33050190 gatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttat 33050259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 2623742 - 2623799
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaa 115  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| || |||||||||    
T  2623742 ttaacatgggaataacaagtggaaaagtcatgtgtaaattttattcctgggaataaaa 2623799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 10994216 - 10994155
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattat 278  Q
    |||||||||||||| |||||||||||| ||||| |||||| | | |||||||||| ||||||    
T  10994216 gatatttgtacaaccattttgtgacaatcttttgacaactttatctctcatactcacattat 10994155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 35017160 - 35017213
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatact 270  Q
    |||||||||||||||||||||||||||  ||||||||||| | | |||||||||    
T  35017160 gatatttgtacaactattttgtgacaacttttttacaactttatctctcatact 35017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 55927119 - 55927159
Alignment:
Q  323 aaattgtcacaaaaattgtctcaaatggttgctcaaatatc 363  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  55927119 aaattgtcacaaaaattgtctcaaatggatgttcaaatatc 55927159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 30250364 - 30250286
Alignment:
Q  217 gatatttgtacaactattttgtgacaaact-ttttacaactatttttctcatactcgcattatgttcttattatcttttt 295  Q
    ||||||||||||||||||||| |  ||||| || ||||||| ||| |||||||||| ||||||||| ||||| |||||||    
T  30250364 gatatttgtacaactattttg-gtaaaactattgtacaactttttctctcatactcacattatgtttttattctcttttt 30250286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 12241065 - 12241135
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| | ||||  |||| |||||| | | |||||||||| ||||||||| |||||    
T  12241065 gatatttgtacaactattttctaacaactttttgacaactttctctctcatactcacattatgtttttatt 12241135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 29577500 - 29577430
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||||||||||||||||   ||||  ||| ||||||| | |||||||||||| |||||| ||||||||    
T  29577500 gatatttgtacaactatttttgtacaatttttgtacaactttctttctcatactcacattatcttcttatt 29577430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 33820400 - 33820330
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| | ||||  |||| |||||| | | |||||||||| ||||||||| |||||    
T  33820400 gatatttgtacaactattttctaacaactttttgacaactttctctctcatactcacattatgtttttatt 33820330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 39449180 - 39449249
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||| |||||||||||||||| || ||||| |||| | ||| |||||||||| ||| |||||||||||    
T  39449180 gatatttatacaactattttgtgataa-cttttgacaattttttctctcatactcacatcatgttcttatt 39449249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 43864041 - 43864114
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||||||||||  || || |||| |||||| ||| |||||||||| |||||| || |||||||||    
T  43864041 gatatttgtacaactattttggtac-aatttttgacaactttttctctcatactcacattatatttttattatct 43864114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 53662492 - 53662422
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||||| ||||  ||| ||||||| | | ||||||| || ||| |||||||||||    
T  53662492 gatatttgtacaactattttgtaacaatttttgtacaactttctctctcatattcacatgatgttcttatt 53662422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 54803392 - 54803322
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||||   |||  ||| ||||||| | | |||||||||| |||||||||||||||    
T  54803392 gatatttgtacaactattttggtgcaatttttgtacaactttctctctcatactcacattatgttcttatt 54803322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 18499941 - 18499982
Alignment:
Q  246 tttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  18499941 tttttataactctttttctcatactcacattatgttcttatt 18499982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 14228714 - 14228784
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||||||| ||  ||| ||||||| | | |||||||||| ||| |||||||||||    
T  14228714 gatatttgtacaactattttgtgataacttttgtacaactttctctctcatactcacatgatgttcttatt 14228784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 40719707 - 40719641
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttct 283  Q
    |||||||||||||| ||||| | |||| ||||| |||||| | ||||||||||||||||||| ||||    
T  40719707 gatatttgtacaaccattttctaacaaccttttgacaactttctttctcatactcgcattatcttct 40719641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 43873755 - 43873679
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatcttt 293  Q
    |||||||||||||| ||||||||||||  |||| |||||| | | | |||||||| ||||||||| ||||| |||||    
T  43873755 gatatttgtacaaccattttgtgacaattttttgacaactctctctttcatactcacattatgtttttattctcttt 43873679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 6161955 - 6162025
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||| |||||| ||||| |||||| | | | |||||||| ||||||||| |||||    
T  6161955 gatatttgtacaaccattttatgacaaccttttgacaactctctctttcatactcacattatgtttttatt 6162025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 21273774 - 21273700
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||| ||||||||||||  | || |||| | | | |||||||||| ||||||||| |||||||||    
T  21273774 gatatttgtacaaccattttgtgacaacttcttgacaattttatctctcatactcacattatgtttttattatct 21273700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 37562205 - 37562135
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||| ||||||||  |||  |||||| | | |||||||||||||| || ||||||||    
T  37562205 gatatttgtacaactattatgtgacaacttttagacaactttctctctcatactcgcatgatattcttatt 37562135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 44380678 - 44380612
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttct 283  Q
    |||||||||||||| |||||||||||| ||||  |||||| | | |||||||||| |||||| ||||    
T  44380678 gatatttgtacaaccattttgtgacaacctttaaacaactttctctctcatactcacattatattct 44380612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 23258170 - 23258207
Alignment:
Q  326 ttgtcacaaaaattgtctcaaatggttgctcaaatatc 363  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  23258170 ttgtcacaaaaattgtttcaaatggttgttcaaatatc 23258207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 1107988 - 1108062
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    ||||||||||| |||||||||| ||||  ||| ||||||| | | |||||||||| ||||||||| |||||||||    
T  1107988 gatatttgtacgactattttgttacaacttttgtacaactttatctctcatactcacattatgtttttattatct 1108062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 3771070 - 3771000
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||| |||||||| ||||||||||||  |||| |||||  | | |||||||||| |||||||||||||||    
T  3771070 gatatctgtacaaccattttgtgacaactttttgacaaccctctctctcatactcacattatgttcttatt 3771000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 8897389 - 8897459
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||| |||||| ||||| |||||| | | | |||||||| ||||||||| |||||    
T  8897389 gatatttgtacaaccattttatgacaaccttttgacaactctctctttcatactcacattatgtttttatt 8897459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 12401199 - 12401273
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||  | ||||| ||||  ||||||||||| | | |||||||||| ||||||| |||||||||||    
T  12401199 gatatttgtacaatcaatttgtaacaacttttttacaactttctctctcatactcacattatggtcttattatct 12401273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 12779670 - 12779600
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| | ||||||||||  |||| |||||| | | |||||||||| ||||||||| |||||    
T  12779670 gatatttgtacaaccaatttgtgacaactttttgacaactttatctctcatactcacattatgtttttatt 12779600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 36572698 - 36572768
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||| ||||||||||||||||  |||| |||||| | | | |||||||| ||||||||| |||||    
T  36572698 gatatttgtataactattttgtgacaactttttgacaactctctctttcatactcacattatgtttttatt 36572768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 22920555 - 22920482
Alignment:
Q  218 atatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    ||||||||||||| ||||||| ||||| |||  |||||| | | |||||||||| ||| |||||||||| ||||    
T  22920555 atatttgtacaaccattttgtaacaaattttggacaactttctctctcatactcacatgatgttcttatcatct 22920482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 13622762 - 13622709
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaat 111  Q
    |||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||    
T  13622762 ttaacatgggaataacaaatggaaaagtcatgtgtaaattttattcctaggaat 13622709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 39749064 - 39749121
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaa 115  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||  || ||||||||    
T  39749064 ttaacatgggaataacaagtgaaaaaatcatgtgtaaattttattcttaagaataaaa 39749121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 1295339 - 1295407
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttctta 285  Q
    |||||||||||||||||||||||| ||  |||  |||||| ||| |||||||||| |||||| ||||||    
T  1295339 gatatttgtacaactattttgtgataacttttggacaactttttctctcatactcacattatattctta 1295407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 7867775 - 7867707
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttctta 285  Q
    |||||||||||||||||||||||||||  |||  |||| | | |||||||||||| |||||| ||||||    
T  7867775 gatatttgtacaactattttgtgacaacttttaaacaattttctttctcatactcacattatattctta 7867707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 31206915 - 31206848
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttctt 284  Q
    |||||||||||||  ||||||||||||| |||| |||||| | |||||||||||  ||| ||||||||    
T  31206915 gatatttgtacaatcattttgtgacaaatttttgacaactttctttctcatacttacataatgttctt 31206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 4615996 - 4616054
Alignment:
Q  58 ttaacatgggaataacaagtagaaaaatcatttgtaaattttatttctaggaataaaaa 116  Q
    |||||||||||||||||||| ||||| | || ||||||||||||| ||| | |||||||    
T  4615996 ttaacatgggaataacaagtggaaaagtaatgtgtaaattttattcctaagtataaaaa 4616054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 41877675 - 41877605
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| | |||||||||  ||||| |||||| ||| |||||||||| ||||||  |||||||    
T  41877675 gatatttgtacaaccactttgtgacacccttttgacaactttttctctcatactcacattatactcttatt 41877605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 47988549 - 47988479
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| | ||||  |||| |||||| | | |||||||||| |||||| ||||||||    
T  47988549 gatatttgtacaactattttctaacaactttttgacaactttctctctcatactcacattatcttcttatt 47988479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 47997836 - 47997766
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| | ||||  |||| |||||| | | |||||||||| |||||| ||||||||    
T  47997836 gatatttgtacaactattttctaacaactttttgacaactttctctctcatactcacattatcttcttatt 47997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 48007123 - 48007053
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||||||| | ||||  |||| |||||| | | |||||||||| |||||| ||||||||    
T  48007123 gatatttgtacaactattttctaacaactttttgacaactttctctctcatactcacattatcttcttatt 48007053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 11327115 - 11327184
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||| ||||||||||||  ||| ||||||| | | |||||||||| ||| ||| ||||||    
T  11327115 gatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttat 11327184  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 49130992 - 49131029
Alignment:
Q  326 ttgtcacaaaaattgtctcaaatggttgctcaaatatc 363  Q
    ||||||||||||||||||||||||| || |||||||||    
T  49130992 ttgtcacaaaaattgtctcaaatggatgttcaaatatc 49131029  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 39229762 - 39229695
Alignment:
Q  220 atttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||||||| | |||||||||| ||||| |||||| | ||||||||| || ||||||| |||||||    
T  39229762 atttgtacaaccactttgtgacaaccttttaacaactttatttctcatattcacattatgctcttatt 39229695  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 2308386 - 2308316
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| | ||| |||||| ||||| |||||| | | |||||||||| |||||| ||||||||    
T  2308386 gatatttgtacaaccaatttttgacaaccttttgacaactttatctctcatactcacattatattcttatt 2308316  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 11980658 - 11980728
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||| | ||||  |||| |||||| ||| |||||||||| |||||| ||||||||    
T  11980658 gatatttgtacaaccattttctaacaactttttgacaactttttatctcatactcacattatcttcttatt 11980728  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 14140401 - 14140331
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||||| ||||||||||  |||| |||||||| | |||||| ||| ||||||  |||||||    
T  14140401 gatatttgtacaactaatttgtgacaactttttgacaactatctctctcattctcacattatactcttatt 14140331  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 31635874 - 31635800
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||| ||||| | ||||  |||| |||||| | | |||||||||| |||||| ||||||||||||    
T  31635874 gatatttgtacaaccattttctaacaactttttgacaactttctctctcatactcacattatcttcttattatct 31635800  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 36383469 - 36383543
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||  ||||||||||||  ||| ||||||| | | |||||||||| ||| |||||||||| ||||    
T  36383469 gatatttgtacaaagattttgtgacaacttttgtacaactttctctctcatactcacatgatgttcttatcatct 36383543  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 44484720 - 44484646
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttattatct 291  Q
    |||||||||||||| ||||||| ||||  ||| ||||||| | | |||||||||| ||| |||||||||| ||||    
T  44484720 gatatttgtacaaccattttgtaacaatttttgtacaactttctctctcatactcacatgatgttcttatcatct 44484646  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 14714124 - 14714161
Alignment:
Q  326 ttgtcacaaaaattgtctcaaatggttgctcaaatatc 363  Q
    ||||||||||||||||||||||||| || |||||||||    
T  14714124 ttgtcacaaaaattgtctcaaatggatgttcaaatatc 14714161  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 11785362 - 11785432
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||||||||||  |||| |||||| | | ||||||| || |||||| ||||||||    
T  11785362 gatatttgtacaaccattttgtgacaattttttgacaactttctatctcatattcacattatattcttatt 11785432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 21506343 - 21506413
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    |||||||||||||| ||||| ||||||  |||| |||||| | | |||||||||| |||||| ||||||||    
T  21506343 gatatttgtacaaccattttttgacaactttttgacaactttctctctcatactcacattatcttcttatt 21506413  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 25554252 - 25554313
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattat 278  Q
    |||||||||||||| |||||||| |||  ||||||||||| | | |||||||||| ||||||    
T  25554252 gatatttgtacaaccattttgtggcaatttttttacaactttctctctcatactcacattat 25554313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 27334865 - 27334934
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||||||||||||||||  ||| || |||| |  ||||||||||| ||| ||| ||||||    
T  27334865 gatatttgtacaactattttgtgacaacttttgtataactttccttctcatactcacatgatggtcttat 27334934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 27395605 - 27395674
Alignment:
Q  217 gatatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttat 286  Q
    |||||||||||||||||||||||||||  ||| || |||| |  ||||||||||| ||| ||| ||||||    
T  27395605 gatatttgtacaactattttgtgacaacttttgtataactttccttctcatactcacatgatggtcttat 27395674  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 8370 - 8301
Alignment:
Q  218 atatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||||||||| ||||||||||||  | || |||||| ||| ||||||||||  ||||| ||||||||    
T  8370 atatttgtacaaccattttgtgacaacttcttaacaactgtttctctcatactcatattatattcttatt 8301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 278503 - 278434
Alignment:
Q  218 atatttgtacaactattttgtgacaaactttttacaactatttttctcatactcgcattatgttcttatt 287  Q
    ||||||||||||| ||| ||| ||||  |||| |||| ||||| ||||||| | ||||||||||||||||    
T  278503 atatttgtacaaccattctgtaacaattttttgacaaatatttctctcatagtggcattatgttcttatt 278434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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