View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_6 (Length: 615)
Name: NF18240_low_6
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Original strand, 40661557 - 40662148
Alignment:
| Q |
16 |
cagtgaacattgaataatatattgatgaacatgaaaaggtacatctatttcacaaaatctgcaacatgggagagcatttccacaggtttataacgttgtt |
115 |
Q |
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| T |
40661557 |
cagtgaacattgaataatatattgatgaacatgaaaaggtactgctatttcacaaaatctgcaacatgggagagcatttccacaggtttataacgttgtt |
40661656 |
T |
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| Q |
116 |
ttggggaagcagctggaaatggtgtggcactatggcaaaaattgttcaatttcatggcgattgagtcttcaattaagtgatcgggacttttaagtttatg |
215 |
Q |
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| T |
40661657 |
ttggggaagcagctggaaatggtgtggcactatggcaaaaattgttcaatttcatggcgattgagtctttaattaagtgatcaggacttttacgtttatg |
40661756 |
T |
|
| Q |
216 |
cattattttctctctttgacatatagttctgctgtaaactgcagagttttacctgtgattgaacagcacttggccaaaggaaccgagaaacatatcacat |
315 |
Q |
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| T |
40661757 |
cattattttctctctttgacatatagttctgctgtaaactgcagagttttacctgtgattgaacagcacttggccaaaggaaccgagaaacatatcacat |
40661856 |
T |
|
| Q |
316 |
tatcagtttcatgattacttcagtttcaaatatatcttttacttcagaagcaaacaaaattacagtttcaagataatattacttttatatatctacgcaa |
415 |
Q |
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| T |
40661857 |
tatcagtttcatgatcacttcagtttcaaatatatcttttacttcagaagcaaacaaaattacagtttcaaggtaatattacttttatatatctatgcaa |
40661956 |
T |
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| Q |
416 |
aaaagaatatcataca-nnnnnnnaggggaatatcattacatttgaataatagaatgtctaactttcttcattattttcgaaaaaagcagacaactttat |
514 |
Q |
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| T |
40661957 |
aaaagaatatcatacattttttttaggggaatatcattacatttgaataatagaatgtctaactttcttcattattttcgaaaaaagcagacaactttat |
40662056 |
T |
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| Q |
515 |
tctcaagattattgagtgcctaaacaggcatcaagtcttcctcaacaattggaggcctatttgtatgtaaagatattggttaagctgatgat |
606 |
Q |
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| T |
40662057 |
tctcaagattattgagtgcctaaacaggcatcaagtcttcctcaacaattggaggcctatttgtatgtaaagatattggttaagctgatgat |
40662148 |
T |
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