View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_7 (Length: 522)
Name: NF18240_low_7
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 47635630 - 47636136
Alignment:
| Q |
1 |
tcatcagggacaattgttgcaattgtggttccgatttctgtggccacgctgctattaatcgttggtgtttgtttcttaagtaaaagagcatggaagaaga |
100 |
Q |
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| T |
47635630 |
tcatcagggacaattgttgcaattgtggttccgatttctgtggccacactgctattaatcgttggtgtttgtttcttaagtaaaagagcatggaagaaga |
47635729 |
T |
|
| Q |
101 |
agcatgactctgcagcacaagatccgaaaagtaagggcgtcagttaattgaaaagcagattttaagtcttaatttgtttcttatatgcataatctgctgt |
200 |
Q |
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| T |
47635730 |
agcatgactctgcagcacaagatcctaaaagtaagggcgtcagttaattgaaaagcagattttaagtcttaatttgtttcttatatgcataatctgctgt |
47635829 |
T |
|
| Q |
201 |
cataagttgatcttatagacctataatttttgcttcatagctgaaactgatatttccactgtggaatccttgagatttgatttgagtacacttgaagaag |
300 |
Q |
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| T |
47635830 |
cataagttgatcttatagacctataatttttgcttcatagctgaaactgatatttccactgtggaatccttgagatttgatttgagtacacttgaagaag |
47635929 |
T |
|
| Q |
301 |
ctacaaacaaattctcagaagctaataagctaggtgaaggtggatttggtgaggtttacaaggtatgaagttaacatgcttttgtttcttcataacatgg |
400 |
Q |
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| T |
47635930 |
ctacaaacaaattctcagaagctaataagctaggtgaaggtggatttggtgaggtttacaaggtatgaagttaacatacttttgtttcttcatagcatgg |
47636029 |
T |
|
| Q |
401 |
aaattataccaattgttatatataccatgtaatttttgtgaaaattcagggctcacttccgagcggacaagaaatagctgtcaagagactctctaaacac |
500 |
Q |
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| T |
47636030 |
aaattataccaattgttatatataccatgtaatttttgtgaaaattcagggctcacttccgagcggacaagaaatagctgtcaagagactctctaaacac |
47636129 |
T |
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| Q |
501 |
tcgggac |
507 |
Q |
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| T |
47636130 |
tcgggac |
47636136 |
T |
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