View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_low_8 (Length: 511)
Name: NF18240_low_8
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 26553857 - 26554349
Alignment:
| Q |
17 |
taagagactcaaaagcattcaagaatggccacatgatcagatgtgaacggtaatctaacagctaacaataaacacagccaccaaagtcatgaagttaaat |
116 |
Q |
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| T |
26553857 |
taagagactcaaaagcattctagaatggccacatgatcagatgtgaacggtaatctaacagctaacaataaacacagccaccaaagtcatgaagttaaat |
26553956 |
T |
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| Q |
117 |
tctttcatgtaatttcagattaagataccctcgtcatttgcttctatgtttccttgatgtgatgttgaatatgaatttccattttgcctaatgaagggaa |
216 |
Q |
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| T |
26553957 |
tctt-catgtaatttcagattaagataccctcgtcatttgcttcgatgtttccttgatgtgatgttgaatatgaatttccattttgcctaatgaagggaa |
26554055 |
T |
|
| Q |
217 |
ctttaggttgaattttcgtgttaattcggtaactaaactttcaggcatgaggggaatggggagggattgagttacacgcatgtcaccagactgaatcgct |
316 |
Q |
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| T |
26554056 |
ctttaggttgaattttcgtgttaatttggtaactaaactttcaggcatgaggggaatggagagggattgagttacacgcatgtcaccaaactgaatcgct |
26554155 |
T |
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| Q |
317 |
tcccatctagtgagtttatgacaatttatcctctttttgataaatttttgaatgattttgatgctttagagtcatacatgtttctgaaaatgatgctcaa |
416 |
Q |
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| T |
26554156 |
tcccatctagtgagtttatgacaatttattctctttttgataaatttttgaatgattttgatgctttagagtcatacatgtttctgaaaatgatgctcaa |
26554255 |
T |
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| Q |
417 |
caaaattcatgtttttaattcaactaaacataatacatgtttctttgcttttgctatatatagatggccgaagaagagccaccacagtcgtccc |
510 |
Q |
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| T |
26554256 |
caaaatacatgtttttaattcaactaaacataatacatgtttctttgcgtttgctatatatagatggccgaagaagagccaccacagccgtccc |
26554349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 36123762 - 36123794
Alignment:
| Q |
85 |
taaacacagccaccaaagtcatgaagttaaatt |
117 |
Q |
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| T |
36123762 |
taaacacagtcaccaaagtcatgaagttaaatt |
36123794 |
T |
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