View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_low_9 (Length: 498)
Name: NF18240_low_9
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 486
Target Start/End: Original strand, 36360175 - 36360650
Alignment:
| Q |
10 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36360175 |
aggaccagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttg |
36360274 |
T |
|
| Q |
110 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
36360275 |
aatgcctgaatattattatatgtccaattataggaaaatttaagttatttttttagaaaatcatt-gatgttaatagaaaaccaaattagtatcgtatgg |
36360373 |
T |
|
| Q |
210 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattatgatttttaagctacatattaagagtttattatacctgtgtgtcatccgtat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36360374 |
gcatacaaaatattaaatatgaaatttatcaatagttcgtatatattttgatttttaagctatatattaagagtttattatacctgtgtgtcatccgtat |
36360473 |
T |
|
| Q |
310 |
gaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36360474 |
gaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttg |
36360573 |
T |
|
| Q |
410 |
ctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtg |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36360574 |
ctctatcatgttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtg |
36360650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 36348911 - 36349031
Alignment:
| Q |
10 |
aggagcagagaatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc------cctgacgaacatactacttcccaagcc |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||| || | ||||| ||||||||| ||||||||||| |
|
|
| T |
36348911 |
aggaccagagaatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagcc |
36349010 |
T |
|
| Q |
104 |
ttcttgaatgcctgaatatta |
124 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
36349011 |
ttctcgaatgcctgaatatta |
36349031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 36349119 - 36349196
Alignment:
| Q |
288 |
tatacctgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaa |
365 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| || ||||||| ||||| |||||||| |||| |
|
|
| T |
36349119 |
tatacctgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaatttgaagtgaacttgaa |
36349196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University