View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18241_high_7 (Length: 312)

Name: NF18241_high_7
Description: NF18241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18241_high_7
NF18241_high_7
[»] chr1 (2 HSPs)
chr1 (23-301)||(34049015-34049298)
chr1 (170-270)||(8934005-8934105)
[»] chr8 (1 HSPs)
chr8 (173-266)||(40743499-40743592)
[»] chr7 (1 HSPs)
chr7 (197-281)||(3625236-3625320)
[»] chr4 (2 HSPs)
chr4 (218-297)||(29446395-29446473)
chr4 (192-242)||(22784118-22784168)
[»] chr5 (1 HSPs)
chr5 (192-236)||(18291572-18291616)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 301
Target Start/End: Original strand, 34049015 - 34049298
Alignment:
Q  23 gtcaatttcaaccattggaga-----aaagtttggattcaagcatgtggatgcttctccaactacgtgtaactagctctttt-atgcaatggattagttg 116  Q
    |||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34049015 gtcaatttcaaccattggagagctttaaagtgtggattcaagcatgtggatgcttctccaactatgtgtaactagctctttttatgcaatggattagttg 34049114  T
Q  117 taagtagttaagattctaacgtattactcttaatctgattggttgtatattcaatatttggtttaaatatttgcataatgcttttgtcgacgtgcaatct 216  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34049115 taagtagttaagattctaatgtattactcttaatttaattggttgtatatgtaatatttggtttaaatatttgcataatgcttttgtcgacgtgcaatct 34049214  T
Q  217 gcaaacgatattttgatttagcaagtctgagacgttgacttcttacttaagggatttgttttaaaaccatatatagatactgatg 301  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34049215 gcaaacaatattttgatttagcaagtgtgagacgttgacttcttacttaagggatttgtttt-aaaccatatatagatactgatg 34049298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 8934005 - 8934105
Alignment:
Q  170 atatttggtttaaatatttgcataatgcttttgtcgacgtgcaatctgcaaacgatattttgatttagcaagtctgagacgttgacttcttacttaaggg 269  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||   |||||||||||||||||||||||| ||| ||   ||||| |||||||||||    
T  8934005 atatttggtttaaatatgtttttaatgcttttgtcgatgtgcaatccaaaaacgatattttgatttagcaagtgtgatacaacgacttgttacttaaggg 8934104  T
Q  270 a 270  Q
    |    
T  8934105 a 8934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 40743499 - 40743592
Alignment:
Q  173 tttggtttaaatatttgcataatgcttttgtcgacgtgcaatctgcaaacgatattttgatttagcaagtctgagacgttgacttcttacttaa 266  Q
    |||| |||||||||||   ||||||||||||||||| ||| || | ||||||||||||||||||||||||  ||||| ||||||| || |||||    
T  40743499 tttgatttaaatatttatttaatgcttttgtcgacgagcactccgtaaacgatattttgatttagcaagtgcgagacattgacttgttgcttaa 40743592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 3625236 - 3625320
Alignment:
Q  197 cttttgtcgacgtgcaatctgcaaacgatattttgatttagcaagtctgagacgttgacttcttacttaagggatttgttttaaa 281  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |  ||||| | || || ||| ||||||||  |||||||||    
T  3625236 cttttgtcgacgtgcaatcaacaaacgatattttgatttagcaaatgcgagacatcgatttattatttaagggacatgttttaaa 3625320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 29446395 - 29446473
Alignment:
Q  218 caaacgatattttgatttagcaagtctgagacgttgacttcttacttaagggat-ttgttttaaaaccatatatagatact 297  Q
    |||||||||||||||||||| | || |||||| | ||||| ||||||||||||| ||||||  ||||||| ||||||||||    
T  29446395 caaacgatattttgatttagtaggtgtgagacatcgacttgttacttaagggatcttgttt--aaaccatgtatagatact 29446473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 22784118 - 22784168
Alignment:
Q  192 taatgcttttgtcgacgtgcaatctgcaaacgatattttgatttagcaagt 242  Q
    |||||||||| |||||||| |||||| ||| ||||||||||||||| ||||    
T  22784118 taatgcttttctcgacgtgtaatctgaaaatgatattttgatttagaaagt 22784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 18291616 - 18291572
Alignment:
Q  192 taatgcttttgtcgacgtgcaatctgcaaacgatattttgattta 236  Q
    ||||| |||||||||  || |||||||||||||||||||||||||    
T  18291616 taatgtttttgtcgatatgtaatctgcaaacgatattttgattta 18291572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University