View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18241_low_4 (Length: 433)
Name: NF18241_low_4
Description: NF18241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18241_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 42959918 - 42960310
Alignment:
| Q |
17 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959918 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
42960017 |
T |
|
| Q |
117 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960018 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
42960117 |
T |
|
| Q |
217 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960118 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
42960217 |
T |
|
| Q |
317 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960218 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagggttgtcatc |
42960310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 5504817 - 5504434
Alignment:
| Q |
17 |
catcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatcc |
116 |
Q |
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||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| | ||| || ||||||| ||| |||||||||||| ||| |
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| T |
5504817 |
catcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatca |
5504718 |
T |
|
| Q |
117 |
gaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacat |
216 |
Q |
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| | ||||| || ||||| ||||||||||| || |||||||| ||||| ||||||||| | || ||||| ||||| || ||| |||||| ||| |
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| T |
5504717 |
gggctaactacctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcat |
5504618 |
T |
|
| Q |
217 |
gctttggtataaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactg |
316 |
Q |
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| |||||||| | ||||| | ||| ||||||| | |||||||||| |||| |||| | ||| ||| || ||| ||||||||||| | |||||| |
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| T |
5504617 |
gttttggtatgaagttgacagtagtcttcacactaaggttaagaagtctctctgcggtttctcttttacataatgtgtagtttgtgaagtgttctgactg |
5504518 |
T |
|
| Q |
317 |
gacaacttttgttgctaaccggattccttcgacacagcgatgaagatcgtaagggtgactgaagtagttgaaggtaacagcagg |
400 |
Q |
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||| ||||| | || | | ||| |||||||| ||||| | | |||||| || ||||||||||||||||||||||||||||| |
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| T |
5504517 |
gactactttaatggccatgctgatcccttcgacgcagcgctttaaatcgtatggatgactgaagtagttgaaggtaacagcagg |
5504434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
144 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
193 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
144 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
193 |
Q |
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||||||||||| ||||| || || |||||||||||||||||||| ||||| |
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| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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