View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18241_low_5 (Length: 334)
Name: NF18241_low_5
Description: NF18241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18241_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 49951607 - 49951306
Alignment:
| Q |
19 |
acttttgttaatgaatcatatacaataaatataagtgggtagttagcgatctaaaagtctnnnnnnnnnnnnnnntttaatacaaagtttattttttccc |
118 |
Q |
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| T |
49951607 |
acttttgttaatgaatcatatacaataaatataagtgggtagttagcgatctaaaagtctaaaaaacgcaaaaaatttaatacaaagtttattttttccc |
49951508 |
T |
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| Q |
119 |
ctactcgtataagtgctccaagaatgtttgttagcatatccc-tttaaatataagtgcatgtgttaccttctatatattcatatgtttga-ttttttggt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49951507 |
ctactcgtataagtgctccaagaatgtttgttagcatctcccttttaagtataagtgcatgtgttaccttctatatattcatatgtttgatttttttggt |
49951408 |
T |
|
| Q |
217 |
tttctttgtttcactacctgtttatggtttcaaagtaaca--cttgctctcgaattccgatcgtgcaacaattccatgcatttacatagtaaacacattg |
314 |
Q |
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||||||||||||||||| |||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951407 |
tttctttgtttcactacttgtttatggttttaaattaacactcttactctcgaattccgatcgtgcaacaattccatgcatttacatagtaaacacattg |
49951308 |
T |
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| Q |
315 |
at |
316 |
Q |
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|| |
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| T |
49951307 |
at |
49951306 |
T |
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