View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18241_low_8 (Length: 283)
Name: NF18241_low_8
Description: NF18241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18241_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 25934492 - 25934634
Alignment:
| Q |
18 |
gacgacactcccgaacaagaacccgattcctcacaacctctcactctccacaatctatcttcaattcgttcccttctcataaacccctccacccctaaca |
117 |
Q |
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| T |
25934492 |
gacgacactcccgaacacgaacccgattcctcacaacctctcactctccacaatctatcttcaattcgttcccttctcataaacccctccacccctaaca |
25934591 |
T |
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| Q |
118 |
ccaccctctcccaaatcctcaaaaccctaaccaattcccaaaa |
160 |
Q |
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| T |
25934592 |
ccaccctctcccaaatcctcaaaaccctaaccaattcccaaaa |
25934634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 25934702 - 25934750
Alignment:
| Q |
228 |
gtcgattccctcgcctccatttcacaacttccttcatccaaaccctttg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934702 |
gtcgattccctcgcctccatttcacaacttccttcatccaaaccctttg |
25934750 |
T |
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