View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18242_high_1 (Length: 372)
Name: NF18242_high_1
Description: NF18242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18242_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 206 - 354
Target Start/End: Complemental strand, 24765527 - 24765379
Alignment:
| Q |
206 |
aatggaatcattcattataagaaccagctgtagcaaagaacaatcaaacataaatattaaaccacttttaaattgcaaacaaatcaaagagtgcctaata |
305 |
Q |
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| T |
24765527 |
aatggaatcattcattataagaaccagctgtagcaaagaaccatcaaacataaatattaaaccacttttaaattgcaaacaaatcaaagagtgcctaata |
24765428 |
T |
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| Q |
306 |
ttagtggagatatgccggcatatatagccatgagtgttggtgttgtaac |
354 |
Q |
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| T |
24765427 |
ttagtggagatatgccggcatatatagccatgagtgttggtgttgtaac |
24765379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 24766301 - 24766112
Alignment:
| Q |
18 |
aataacatgcatccaacaaagtcctccatcgtaaaaatcccatgatgccaccaacgcttgctccacaaaatgcccataattcaacaccttcatttaaagt |
117 |
Q |
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| T |
24766301 |
aataacatacatccaacaaagtcctccatcgtaaaaatcccatgatgccaccaacgcttgctccacaaaatgcccataatgcaacaccttcatttaaagt |
24766202 |
T |
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| Q |
118 |
taacaccacgttcagtaggtttgcaaacaaaacagacttnnnnnnnnnttaaacaaacaatagcgccaaactgttgatgtcatgtcggaatg |
209 |
Q |
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| T |
24766201 |
taacaccacgttcagtaggtttgcaaacaaaac-gactt-aaaaaaaattaaacaaacaataccgccaaattgttgatgtcatgtcggaatg |
24766112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 47763328 - 47763398
Alignment:
| Q |
215 |
attcattataagaaccagctgtagcaaagaaca-atcaaacataaatattaaaccacttttaaattgcaaa |
284 |
Q |
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| T |
47763328 |
attcattataagaaccagttgtagcaaagcacgcatcaaacataaatattaaaccacttttacattgcaaa |
47763398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 16982354 - 16982293
Alignment:
| Q |
73 |
gcttgctccacaaaatgcccataattcaacaccttcatttaaagttaacaccacgttcagta |
134 |
Q |
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| T |
16982354 |
gcttgatccacaaaatgtccaaaatgcaacaccttcatttaaagcgaacatcacgtacagta |
16982293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 21005047 - 21005107
Alignment:
| Q |
68 |
ccaacgcttgctccacaaaatgcccataattcaacaccttca-tttaaagttaacaccacg |
127 |
Q |
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| T |
21005047 |
ccaacgcttgctccacaaaatgaccgtaatgcaacaccttcattttaaagtcaacaccacg |
21005107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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