View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18242_high_2 (Length: 359)
Name: NF18242_high_2
Description: NF18242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18242_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 53588171 - 53588477
Alignment:
| Q |
19 |
tggagatcccttgctaatcttatatgacattccatttatcatcttctagaatggggatactctggattggtgaagttcttgnnnnnnnttcgtttaatcg |
118 |
Q |
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| T |
53588171 |
tggagatcccttgctaatcttatatgacattccatttatcatcttctagaatggggatactttggattggtgaagttcttgaaaaaaattcgtttaatcg |
53588270 |
T |
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| Q |
119 |
tggtactattaggttgaaatgctttcaccatatttctctgtcatttgtattgtaagagtcttttgtaattatatcttttattgataactgtaagacagtt |
218 |
Q |
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| T |
53588271 |
tggtactattaggttgaaatgctttcaccatatttctctgtcatttgtattgtaagagtcttttgtaattatatcttttattgataactgtaagacagtt |
53588370 |
T |
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| Q |
219 |
cgtcctaattgaggtggtccaaa-ttttttaaggcaattcgttaaggtggcccgcttttaccattttcgttacgatgacctgcttccattaagattgtaa |
317 |
Q |
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| T |
53588371 |
cgtcctaattgaggtggtccaaatttttttaaggcagttcgttaaggtggcccgcttttaccattttcattacgatgacctgcttccattaagattgtaa |
53588470 |
T |
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| Q |
318 |
tgcaatt |
324 |
Q |
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||||||| |
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| T |
53588471 |
tgcaatt |
53588477 |
T |
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