View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18242_high_4 (Length: 264)
Name: NF18242_high_4
Description: NF18242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18242_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41079237 - 41079486
Alignment:
| Q |
1 |
ggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatctacttgacaatccggatgtgctacga |
100 |
Q |
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| T |
41079237 |
ggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatctacttgacaattcggatgtgctacga |
41079336 |
T |
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| Q |
101 |
aatcttcatcaagtggtggcgttcgccctcaccggcgacagtggcgc-----acgggtaatgaggtcgagatggttccagtttgaagacatcatccaggt |
195 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079337 |
aatcttcatcaagtggtggcgttcatcctcaccggcgacagtggcgcctgagacgggtaatgaggtcgagatggttccagtttgaagacatcatccaggt |
41079436 |
T |
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| Q |
196 |
aggttgtttcgtatgttgttcattctattctatcaatactatgaattggg |
245 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41079437 |
aggttgtttcgtatgttgttcattctattctataaatactatgaattggg |
41079486 |
T |
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