View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18242_low_1 (Length: 846)

Name: NF18242_low_1
Description: NF18242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18242_low_1
NF18242_low_1
[»] chr5 (2 HSPs)
chr5 (455-836)||(495035-495417)
chr5 (18-312)||(494441-494721)
[»] chr7 (8 HSPs)
chr7 (324-430)||(10979533-10979640)
chr7 (570-691)||(25500970-25501091)
chr7 (572-694)||(25492588-25492710)
chr7 (570-678)||(25642403-25642511)
chr7 (570-678)||(25473842-25473950)
chr7 (570-659)||(25449968-25450057)
chr7 (619-678)||(25429197-25429256)
chr7 (571-688)||(25431183-25431300)
[»] chr2 (1 HSPs)
chr2 (571-673)||(35152984-35153086)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 455 - 836
Target Start/End: Original strand, 495035 - 495417
Alignment:
Q  455 tttgatgcactatgatatattagttattagtaatt-actattatatcaatgctttaaaaatataatttcccccttgaacagagaaaatattgtgttttcg 553  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||  ||     
T  495035 tttgatgcactatgataaattagttattagtaatttactattgtatcaatgctttaaaaatataatttccccctagaacagagaaaataatgtgtaatca 495134  T
Q  554 gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattg 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  495135 gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattg 495234  T
Q  654 taaggaagcttgattttaggctcaactcttctgcttctttcacctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccat 753  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  495235 taaggaagcttgattttaggctcaactcttctgcttctttgccctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccct 495334  T
Q  754 tcttggttagcacacgaaacccccatttcttcataatcaaaccatggccatcttcgccagctttaaacgtgatctgtgctcct 836  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  495335 tcttggttagcacgcgaaacccccatttcttcataatcaaaccatggccatcctcgccagctttaaacgtgatctgtgctcct 495417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 494441 - 494721
Alignment:
Q  18 catgcataactcgagcattgacttctaataataaatattgagtcatgggtaacatggtgactagaaaagcaaaaataataacataggtattgattaatga 117  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  494441 catgcataaatcgagcattgacttctaataataaacatcgagtcatgagtaacatgaggactagaaaagcaaaaataataacatag-tattgattaatga 494539  T
Q  118 caaatttatttttatccaactcagctgttcatgataccatatcatcaaaaacaagtggactgaaaaaatattagtattacatatcataatccatgcttca 217  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  494540 caaatttgtttttatccaactcagctgttcatgataccatatcatcaaaaacaagtggactgaaaaaatattagaattacatatcataatccatgcttca 494639  T
Q  218 tttcttatggaagaatgtactattagaaatatagtggatgtagtagaggcctagcggagactgaaatttcacatgta-tttttacattccatcact 312  Q
    |||||||||||||||||   ||||| | |           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  494640 tttcttatggaagaatg---tattaaaca-----------tagtagaggcctagcggagactgaaatttcacatgtattttttaaattccatcact 494721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 10979533 - 10979640
Alignment:
Q  324 ggaatagaatcaaataagaaatttgagctcaaatccaaaacttcaagcaaagatagccgatgaatcttatcaggaagtggacaataaattcct-aagaaa 422  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||   | |||||| ||||||    
T  10979533 ggaatagaaccaaataagaaatttgaactcaaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaa 10979632  T
Q  423 ccaaacta 430  Q
    ||||||||    
T  10979633 ccaaacta 10979640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 570 - 691
Target Start/End: Complemental strand, 25501091 - 25500970
Alignment:
Q  570 aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt 669  Q
    |||||||| ||||||||||||||  || |||| |||||||||| ||   |||| |||||||||||| |||||||  |||||||||||||||| | |||||    
T  25501091 aaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttcatcagaaacataccaattgtaaggaagttggattt 25500992  T
Q  670 taggctcaactcttctgcttct 691  Q
    |||||||||  || ||||||||    
T  25500991 taggctcaatgctactgcttct 25500970  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 694
Target Start/End: Complemental strand, 25492710 - 25492588
Alignment:
Q  572 aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttta 671  Q
    |||||| |||||||||||||   ||||||| |||||||||| ||   |||| |||||||||||| || ||||  |||||||||||||||| | |||||||    
T  25492710 aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaaacataccaattgtaaggaagttggatttta 25492611  T
Q  672 ggctcaactcttctgcttctttc 694  Q
    |||||||  || |||||||||||    
T  25492610 ggctcaatgctactgcttctttc 25492588  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 678
Target Start/End: Complemental strand, 25642511 - 25642403
Alignment:
Q  570 aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt 669  Q
    |||||||| |||||||||||||   ||||||| ||||||||| | || |||||  ||||||||||| |||||||  ||||||||||||| || | |||||    
T  25642511 aaaaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggattt 25642412  T
Q  670 taggctcaa 678  Q
    |||||||||    
T  25642411 taggctcaa 25642403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 570 - 678
Target Start/End: Original strand, 25473842 - 25473950
Alignment:
Q  570 aaaaggcctagattaaagagattgatttcttttcccttggcttct-tcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatt 668  Q
    |||||||| ||||||||||||| | ||||||||||||||| |||| |||||||| | |  ||||||   ||||||| |||||||||||||||| | ||||    
T  25473842 aaaaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatt 25473940  T
Q  669 ttaggctcaa 678  Q
    |||| |||||    
T  25473941 ttagtctcaa 25473950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 659
Target Start/End: Complemental strand, 25450057 - 25449968
Alignment:
Q  570 aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaagga 659  Q
    |||||||| |||||||||||||   |||| || ||||||||||| || |||||  ||||||||||   ||||||| ||||||||||||||    
T  25450057 aaaaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaagga 25449968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 678
Target Start/End: Complemental strand, 25429256 - 25429197
Alignment:
Q  619 tctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattttaggctcaa 678  Q
    |||| |||| ||||||| |||||||| |||||||||||||| | | ||||||||||||||    
T  25429256 tctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaa 25429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 688
Target Start/End: Original strand, 25431183 - 25431300
Alignment:
Q  571 aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt 670  Q
    ||||||| |||||| |||||   ||||| || | ||||||| | || |||||  |||||||||   |||||||| |||||||||||||||| | ||||||    
T  25431183 aaaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggatttt 25431282  T
Q  671 aggctcaactcttctgct 688  Q
     ||||||| ||| |||||    
T  25431283 cggctcaaatctactgct 25431300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 673
Target Start/End: Complemental strand, 35153086 - 35152984
Alignment:
Q  571 aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt 670  Q
    ||||||| |||||| | ||||  |||||||||  |||||||||   |||||||||||| || ||  ||| |||| |||||||||| ||||||| ||||||    
T  35153086 aaaggcccagattataaagatcaatttcttttgacttggcttcagaattctcaacttcttcctcctcagtaactaaccaattgtagggaagctggatttt 35152987  T
Q  671 agg 673  Q
    |||    
T  35152986 agg 35152984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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