View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18242_low_2 (Length: 579)

Name: NF18242_low_2
Description: NF18242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18242_low_2
NF18242_low_2
[»] chr1 (43 HSPs)
chr1 (239-561)||(3528704-3529026)
chr1 (1-184)||(3529081-3529263)
chr1 (1-88)||(25531778-25531865)
chr1 (1-88)||(48219816-48219903)
chr1 (1-92)||(50539256-50539347)
chr1 (1-90)||(23569848-23569937)
chr1 (5-90)||(30529228-30529313)
chr1 (1-90)||(39354438-39354527)
chr1 (1-89)||(32565745-32565833)
chr1 (1-88)||(32988523-32988610)
chr1 (1-88)||(38458729-38458816)
chr1 (1-88)||(48264985-48265072)
chr1 (1-88)||(52378989-52379076)
chr1 (1-98)||(50876354-50876451)
chr1 (3-67)||(47222235-47222299)
chr1 (3-87)||(49805428-49805512)
chr1 (3-65)||(45235021-45235083)
chr1 (2-88)||(48376158-48376244)
chr1 (1-66)||(16751627-16751692)
chr1 (5-73)||(29161857-29161925)
chr1 (2-66)||(38738153-38738217)
chr1 (1-67)||(16265054-16265120)
chr1 (1-67)||(16266183-16266249)
chr1 (1-67)||(26441658-26441724)
chr1 (3-84)||(4605002-4605083)
chr1 (1-66)||(50481300-50481365)
chr1 (1-60)||(42708532-42708591)
chr1 (1-88)||(43680069-43680156)
chr1 (1-67)||(24982372-24982438)
chr1 (1-66)||(31971561-31971626)
chr1 (5-88)||(3898749-3898832)
chr1 (1-88)||(37281092-37281179)
chr1 (3-61)||(1849726-1849784)
chr1 (5-59)||(14075764-14075818)
chr1 (1-47)||(41501782-41501828)
chr1 (1-66)||(23330474-23330539)
chr1 (1-58)||(21034704-21034761)
chr1 (123-184)||(35540407-35540468)
chr1 (53-89)||(3898570-3898606)
chr1 (53-89)||(16265259-16265295)
chr1 (53-89)||(16266388-16266424)
chr1 (53-89)||(26441860-26441896)
chr1 (53-89)||(43680296-43680332)
[»] chr4 (56 HSPs)
chr4 (1-95)||(3901313-3901407)
chr4 (1-90)||(46212524-46212613)
chr4 (1-89)||(46803630-46803718)
chr4 (5-88)||(4264134-4264217)
chr4 (1-88)||(18360147-18360234)
chr4 (1-88)||(36602694-36602781)
chr4 (1-88)||(39786530-39786617)
chr4 (1-95)||(45198514-45198608)
chr4 (1-89)||(5735270-5735358)
chr4 (1-89)||(28166273-28166361)
chr4 (1-89)||(47579286-47579374)
chr4 (1-88)||(3442518-3442605)
chr4 (1-88)||(4209363-4209450)
chr4 (1-88)||(23255935-23256022)
chr4 (1-91)||(28151988-28152078)
chr4 (5-91)||(55190892-55190978)
chr4 (1-90)||(26205878-26205967)
chr4 (5-89)||(5123335-5123419)
chr4 (1-88)||(5744257-5744344)
chr4 (1-94)||(6494582-6494675)
chr4 (1-89)||(7738993-7739081)
chr4 (1-88)||(1377032-1377119)
chr4 (1-88)||(21859093-21859180)
chr4 (1-88)||(21914956-21915043)
chr4 (1-91)||(19652429-19652519)
chr4 (1-83)||(37688207-37688289)
chr4 (3-88)||(19525890-19525975)
chr4 (1-66)||(19731339-19731404)
chr4 (1-66)||(50033042-50033107)
chr4 (1-89)||(19634022-19634110)
chr4 (1-67)||(6923114-6923180)
chr4 (1-67)||(25644380-25644446)
chr4 (1-66)||(19631330-19631395)
chr4 (1-86)||(49768447-49768532)
chr4 (1-57)||(3443561-3443617)
chr4 (1-89)||(19170713-19170801)
chr4 (1-89)||(39260305-39260392)
chr4 (5-60)||(23603825-23603880)
chr4 (1-66)||(50035561-50035626)
chr4 (3-67)||(53568375-53568439)
chr4 (1-60)||(42187153-42187212)
chr4 (1-56)||(55997146-55997201)
chr4 (1-83)||(20678761-20678843)
chr4 (5-63)||(55014287-55014345)
chr4 (1-66)||(26659862-26659927)
chr4 (4-63)||(51737130-51737189)
chr4 (403-553)||(1797194-1797345)
chr4 (1-57)||(50971491-50971546)
chr4 (280-347)||(1797040-1797110)
chr4 (18-66)||(14958030-14958078)
chr4 (18-66)||(39195672-39195720)
chr4 (5-59)||(10181017-10181071)
chr4 (1-37)||(27976744-27976780)
chr4 (10-66)||(31486308-31486364)
chr4 (1-59)||(39193941-39193999)
chr4 (53-89)||(25644585-25644621)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-88)||(41391-41478)
[»] chr8 (37 HSPs)
chr8 (1-88)||(13138306-13138393)
chr8 (1-91)||(38845197-38845287)
chr8 (1-90)||(40013649-40013738)
chr8 (1-88)||(29790942-29791029)
chr8 (1-95)||(3293276-3293370)
chr8 (1-89)||(30289923-30290011)
chr8 (1-88)||(1580939-1581026)
chr8 (1-88)||(6470845-6470932)
chr8 (1-88)||(38739657-38739744)
chr8 (1-88)||(45081812-45081899)
chr8 (1-90)||(2805650-2805739)
chr8 (3-88)||(43066127-43066212)
chr8 (1-89)||(8351054-8351142)
chr8 (1-89)||(37709898-37709986)
chr8 (1-91)||(30380527-30380617)
chr8 (1-90)||(2986337-2986425)
chr8 (1-66)||(886241-886306)
chr8 (1-60)||(12893559-12893618)
chr8 (1-60)||(31127979-31128038)
chr8 (1-91)||(14522377-14522467)
chr8 (1-67)||(18809297-18809363)
chr8 (1-90)||(45253747-45253837)
chr8 (3-88)||(14847210-14847295)
chr8 (1-86)||(23248779-23248864)
chr8 (1-66)||(44123695-44123760)
chr8 (1-55)||(39361158-39361212)
chr8 (1-66)||(10658000-10658065)
chr8 (1-61)||(11854551-11854611)
chr8 (1-67)||(25256355-25256421)
chr8 (2-66)||(9302528-9302592)
chr8 (1-88)||(23764625-23764713)
chr8 (5-59)||(25173848-25173902)
chr8 (5-66)||(42785920-42785981)
chr8 (126-182)||(547034-547090)
chr8 (123-151)||(1342325-1342353)
chr8 (53-89)||(18809502-18809538)
chr8 (53-89)||(31127804-31127840)
[»] chr2 (41 HSPs)
chr2 (1-87)||(41463691-41463777)
chr2 (1-89)||(14372076-14372164)
chr2 (1-89)||(23671375-23671463)
chr2 (1-88)||(7443065-7443152)
chr2 (1-91)||(40425423-40425513)
chr2 (1-90)||(42038521-42038610)
chr2 (1-89)||(18718238-18718326)
chr2 (1-89)||(34826911-34826999)
chr2 (5-97)||(41172935-41173027)
chr2 (3-85)||(14707710-14707792)
chr2 (1-89)||(30708727-30708815)
chr2 (1-89)||(32776074-32776162)
chr2 (1-88)||(3987406-3987493)
chr2 (1-96)||(20517411-20517506)
chr2 (1-88)||(44283453-44283540)
chr2 (1-88)||(44330384-44330471)
chr2 (1-91)||(4045407-4045497)
chr2 (1-89)||(9877257-9877345)
chr2 (1-88)||(27559575-27559662)
chr2 (1-88)||(16941985-16942072)
chr2 (1-88)||(17012650-17012737)
chr2 (1-88)||(40598128-40598215)
chr2 (1-89)||(38963518-38963606)
chr2 (1-67)||(36199125-36199191)
chr2 (4-66)||(38137707-38137769)
chr2 (1-66)||(40898662-40898727)
chr2 (10-81)||(38588072-38588143)
chr2 (1-79)||(24283132-24283210)
chr2 (1-66)||(332300-332363)
chr2 (1-66)||(13399279-13399344)
chr2 (5-89)||(4045849-4045933)
chr2 (3-66)||(4083229-4083292)
chr2 (1-39)||(30776367-30776405)
chr2 (5-66)||(39418198-39418259)
chr2 (1-46)||(43925255-43925300)
chr2 (18-66)||(5030462-5030510)
chr2 (3-66)||(42951362-42951425)
chr2 (123-154)||(17641174-17641205)
chr2 (126-184)||(4652121-4652179)
chr2 (5-37)||(7106329-7106361)
chr2 (123-151)||(13717181-13717209)
[»] chr7 (38 HSPs)
chr7 (1-89)||(37951119-37951207)
chr7 (1-88)||(36819696-36819783)
chr7 (3-88)||(31466534-31466619)
chr7 (1-88)||(19072769-19072856)
chr7 (1-88)||(42086812-42086899)
chr7 (1-88)||(47080980-47081067)
chr7 (1-99)||(2400274-2400372)
chr7 (1-90)||(44479894-44479983)
chr7 (1-89)||(28185582-28185670)
chr7 (1-88)||(21392018-21392105)
chr7 (1-88)||(23474143-23474230)
chr7 (5-88)||(47713680-47713763)
chr7 (1-89)||(32619116-32619204)
chr7 (1-89)||(36859382-36859470)
chr7 (1-88)||(36905526-36905613)
chr7 (1-60)||(10464289-10464348)
chr7 (1-88)||(34478185-34478272)
chr7 (1-88)||(37231738-37231825)
chr7 (1-90)||(48531320-48531409)
chr7 (1-87)||(31110625-31110709)
chr7 (1-88)||(35500921-35501008)
chr7 (3-89)||(4612263-4612349)
chr7 (1-67)||(36643183-36643249)
chr7 (1-79)||(47537932-47538010)
chr7 (3-88)||(42834468-42834553)
chr7 (22-88)||(47713774-47713840)
chr7 (5-63)||(31497881-31497939)
chr7 (1-70)||(2450706-2450776)
chr7 (5-66)||(27916616-27916677)
chr7 (1-49)||(18795314-18795362)
chr7 (13-66)||(4033313-4033366)
chr7 (13-66)||(38198503-38198556)
chr7 (1-54)||(39982288-39982341)
chr7 (1-61)||(29770648-29770708)
chr7 (18-66)||(33613238-33613286)
chr7 (53-89)||(10464114-10464150)
chr7 (53-89)||(36643965-36644001)
chr7 (3-59)||(42493806-42493862)
[»] chr5 (43 HSPs)
chr5 (1-89)||(4925012-4925100)
chr5 (1-93)||(29627263-29627355)
chr5 (1-89)||(35290285-35290373)
chr5 (1-88)||(35448171-35448258)
chr5 (1-88)||(37516144-37516231)
chr5 (1-91)||(38697960-38698050)
chr5 (1-90)||(5213096-5213185)
chr5 (1-94)||(40512854-40512947)
chr5 (5-88)||(23988579-23988662)
chr5 (1-88)||(42148307-42148394)
chr5 (2-88)||(32334815-32334901)
chr5 (1-90)||(37843749-37843838)
chr5 (1-89)||(39036409-39036497)
chr5 (1-88)||(41411332-41411419)
chr5 (1-87)||(5364421-5364507)
chr5 (1-90)||(32002188-32002277)
chr5 (1-90)||(39894779-39894868)
chr5 (1-88)||(1830654-1830741)
chr5 (1-88)||(40316121-40316208)
chr5 (4-98)||(30779922-30780016)
chr5 (1-91)||(43517234-43517324)
chr5 (1-66)||(14475408-14475473)
chr5 (1-64)||(19889678-19889741)
chr5 (1-67)||(4300006-4300072)
chr5 (1-67)||(16048104-16048170)
chr5 (1-66)||(42421707-42421772)
chr5 (3-67)||(43067250-43067314)
chr5 (1-67)||(970159-970225)
chr5 (5-67)||(22613887-22613949)
chr5 (1-88)||(39405764-39405851)
chr5 (29-90)||(16954688-16954749)
chr5 (5-66)||(25563522-25563583)
chr5 (3-66)||(19087946-19088009)
chr5 (5-60)||(19868863-19868918)
chr5 (1-60)||(15268138-15268197)
chr5 (1-55)||(24520242-24520295)
chr5 (1-66)||(2863976-2864041)
chr5 (5-59)||(21961256-21961310)
chr5 (53-94)||(35447991-35448032)
chr5 (53-89)||(970364-970400)
chr5 (53-89)||(4299832-4299868)
chr5 (53-89)||(22613708-22613744)
chr5 (40-88)||(37304358-37304406)
[»] chr3 (43 HSPs)
chr3 (1-89)||(34827321-34827409)
chr3 (1-89)||(46483550-46483638)
chr3 (1-89)||(18659051-18659139)
chr3 (1-88)||(7459994-7460081)
chr3 (5-88)||(21906996-21907079)
chr3 (5-88)||(29728276-29728359)
chr3 (1-88)||(38492052-38492139)
chr3 (1-88)||(49057856-49057943)
chr3 (1-90)||(10571318-10571407)
chr3 (1-90)||(43137849-43137938)
chr3 (3-88)||(54840304-54840389)
chr3 (1-89)||(8559179-8559267)
chr3 (1-88)||(25097361-25097448)
chr3 (1-88)||(37832900-37832987)
chr3 (1-88)||(45167299-45167386)
chr3 (5-94)||(53066369-53066457)
chr3 (1-89)||(1327310-1327398)
chr3 (1-65)||(38833687-38833751)
chr3 (1-65)||(51062413-51062477)
chr3 (1-88)||(27848952-27849039)
chr3 (1-64)||(32285350-32285413)
chr3 (1-60)||(45093748-45093807)
chr3 (1-67)||(51392466-51392532)
chr3 (1-90)||(15503023-15503112)
chr3 (2-88)||(52668660-52668746)
chr3 (5-66)||(3547598-3547659)
chr3 (5-66)||(9145524-9145585)
chr3 (1-66)||(28690538-28690603)
chr3 (3-66)||(10437304-10437367)
chr3 (5-60)||(35718033-35718088)
chr3 (1-88)||(48707017-48707104)
chr3 (1-67)||(4238794-4238860)
chr3 (1-67)||(10435155-10435221)
chr3 (5-67)||(17052885-17052947)
chr3 (1-88)||(32951310-32951397)
chr3 (1-83)||(47638060-47638142)
chr3 (1-66)||(7671487-7671552)
chr3 (1-66)||(36665041-36665106)
chr3 (8-66)||(52550797-52550855)
chr3 (29-61)||(16365449-16365481)
chr3 (3-67)||(48143786-48143849)
chr3 (53-89)||(10435345-10435381)
chr3 (20-88)||(39435228-39435296)
[»] chr6 (19 HSPs)
chr6 (1-88)||(643605-643692)
chr6 (1-88)||(11114565-11114652)
chr6 (1-88)||(33121542-33121629)
chr6 (1-66)||(13207127-13207192)
chr6 (1-88)||(30237165-30237253)
chr6 (5-88)||(18991904-18991987)
chr6 (1-88)||(22020276-22020363)
chr6 (1-88)||(31854818-31854905)
chr6 (1-90)||(24150739-24150828)
chr6 (1-90)||(25435410-25435498)
chr6 (1-88)||(29403644-29403731)
chr6 (1-63)||(29986332-29986394)
chr6 (5-67)||(7098051-7098113)
chr6 (1-88)||(20662233-20662321)
chr6 (1-88)||(8796050-8796137)
chr6 (1-67)||(25163185-25163251)
chr6 (1-66)||(19068942-19069007)
chr6 (5-66)||(16434706-16434767)
chr6 (125-157)||(32134043-32134075)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-95)||(44282-44376)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-88)||(14059-14146)
scaffold0366 (1-88)||(10393-10480)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-88)||(12752-12839)
[»] scaffold0027 (1 HSPs)
scaffold0027 (5-88)||(117321-117404)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-88)||(15390-15477)
scaffold0007 (53-96)||(15208-15251)
[»] scaffold0111 (1 HSPs)
scaffold0111 (5-60)||(38538-38593)
[»] scaffold0340 (1 HSPs)
scaffold0340 (3-88)||(14345-14430)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-41)||(12620-12660)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 239 - 561
Target Start/End: Complemental strand, 3529026 - 3528704
Alignment:
Q  239 tttaaatggattcttttgagtgatcagtggtctatctctgtctcagttatagatcatgccatgtcttcaaagctttcaagtataaaaatacaaaccttgc 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  3529026 tttaaatggattcttttgagtgatcagtggtctatctctgtctcagttatagaccatgccatgtcttcaaagctttcaagtataaaaatacaaatcttgc 3528927  T
Q  339 ctctctttgctaaatactccaccaattagattatttctcctctcctactaaaataaattcgaagaaaacaagttgcatttatttccattattgcaacaat 438  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3528926 ctctctttgctaaatactccaccaattagattatttctcgtctcctactaaaataaattcgaagaaaacaagttgcatttatttccattattgcaacaat 3528827  T
Q  439 tttgtttgcttgtgaaacaaggggttgcaaaatttacatactatacaaagtgtattgtatcgttattgagatgactttgttgagaaatatgatagtctaa 538  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  3528826 tttgtttgcttgttaaacaaggggttgcaaaatttacatactatacaaagtgtattgtatcgttattgagatgacattgttgagaaatatgatagtttaa 3528727  T
Q  539 agaattgcaaccaatatgaaatt 561  Q
    |||||||||||||||||||||||    
T  3528726 agaattgcaaccaatatgaaatt 3528704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3529263 - 3529081
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttatgtag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |     
T  3529263 agagaattgaatatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcattaattaagggacggagggagtattttttatgcaa 3529164  T
Q  101 taatgattacgcaannnnnnnnatgaaaacttacttattttagatgcttaatcaatgtctctatgacactctttagcattctcc 184  Q
    |||| ||||| |||        ||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  3529163 taataattacacaa-tttttttatgaaaatttacttattttggatgcttaaccaatgtctctacgacactctttagcattctcc 3529081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25531865 - 25531778
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  25531865 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 25531778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48219816 - 48219903
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  48219816 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 48219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 50539347 - 50539256
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttt 92  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||||    
T  50539347 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtatttt 50539256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23569848 - 23569937
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| ||||||||||||||||    
T  23569848 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttattgagggacggagggagtatt 23569937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 30529228 - 30529313
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  30529228 aattgaagatatctaagataaaacatatgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagtatt 30529313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 39354438 - 39354527
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||||    
T  39354438 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacgtagggagtatt 39354527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32565833 - 32565745
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||||||    
T  32565833 agagaattgaagatatcaaagagaaaacatatgcattggtacgtgtgtcagagtcaactaagtcatctattgaaggacggagggagtat 32565745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32988523 - 32988610
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |  |||||||||||||    
T  32988523 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagagacggagggagta 32988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38458816 - 38458729
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  38458816 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggaggaagta 38458729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48264985 - 48265072
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  48264985 agagaattgaagatattaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 48265072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 52379076 - 52378989
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  52379076 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 52378989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50876451 - 50876354
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttatgt 98  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||| | |||||||||||||| ||| |||||    
T  50876451 agagaattgaagatatcaaagataaaacatatgcattggtatatgtgttagagtcaactaggtcatttatttagggacggagggagtaatttatatgt 50876354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 47222299 - 47222235
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47222299 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatt 47222235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 49805428 - 49805512
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagt 87  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||| | |||||||||||||    
T  49805428 agaattgaagatatcaaagataaaacatatgcattggtatgtttgtcagagtcaactagatcatttatttagggacggagggagt 49805512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 45235021 - 45235083
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtca 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45235021 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaagtca 45235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 48376244 - 48376158
Alignment:
Q  2 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||| | || |||||||||    
T  48376244 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcaaagttaactaggtcatctattgaagaacagagggagta 48376158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16751627 - 16751692
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16751627 agagaattaaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 16751692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 29161925 - 29161857
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattga 73  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||    
T  29161925 aattgaagatatcaaagataaaacatatgaattggtacgtgtgtcagagtcaactagatcatttattga 29161857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 38738153 - 38738217
Alignment:
Q  2 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38738153 gagaattgaacatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 38738217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16265120 - 16265054
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  16265120 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 16265054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16266249 - 16266183
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  16266249 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 16266183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26441724 - 26441658
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  26441724 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 26441658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4605083 - 4605002
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggaggg 84  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  || || ||||||||||    
T  4605083 agaattaaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactagatcatctatcgagggacggaggg 4605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50481365 - 50481300
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  50481365 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggaatcaactaagtcat 50481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42708591 - 42708532
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  42708591 agagaattgaagatatcaaatataaaacatatgcattggtatgtgtgtcagagtcaacta 42708532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 43680156 - 43680069
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||| | |   ||||||||||||||    
T  43680156 agagaattgaagatatcaaagataaaacatatgcattggtacgcgtgtcgaagtcaactagatcatttaatatgggacggagggagta 43680069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24982438 - 24982372
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||    
T  24982438 agagaattgaagatatcaaatataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 24982372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31971561 - 31971626
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  31971561 agagagttgaatatatcaaagataaaacatatgcattggtacatgtgtcagagtcaactagatcat 31971626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 3898749 - 3898832
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||| | |   ||||||||||||||    
T  3898749 aattgaagatatcaaagataaaacatatgcattggtacgtctgtcgaagtcaactagatcatttaatatgggacggagggagta 3898832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37281179 - 37281092
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||| ||||||| ||| || |||||||||||||||||||||  ||||| ||||  ||||||||    
T  37281179 agagaattgaagatataaaagataaaacacatgcatttgtatgtttgtcagagtcaactaggtcatctattgagggacaaagggagta 37281092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 1849784 - 1849726
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactag 61  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  1849784 agaattgaagatatcaaagataaaacatatgcattggtatatgtgttagagtcaactag 1849726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 14075818 - 14075764
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  14075818 aattgaagatatcaaatataaaacatatgcattggtatgtgtgtcggagtcaact 14075764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41501782 - 41501828
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtg 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  41501782 agagaattgaatatatcaaagataaaacatatgcattggtacgtgtg 41501828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23330539 - 23330474
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||| ||||||||||||||||||||| ||| | |||| || |||||||| ||||    
T  23330539 agagaattgaagatatgaaagataaaacatatgcattgatacatatgtcggaatcaactagatcat 23330474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21034704 - 21034761
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaac 58  Q
    |||||||| ||||||||||||||||||||||| | || |||| ||||||| |||||||    
T  21034704 agagaattaaagatatcaaagataaaacatataccttagtacatgtgtcaaagtcaac 21034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 35540468 - 35540407
Alignment:
Q  123 atgaaaacttacttattttagatgcttaatcaatgtctctatgacactctttagcattctcc 184  Q
    |||||||||||||||||||||||||||||||| ||||  || ||||||  ||| ||||||||    
T  35540468 atgaaaacttacttattttagatgcttaatcattgtccttaggacactagttaacattctcc 35540407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 3898606 - 3898570
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  3898606 gtcaactaggtcatttattgagggacggagggagtat 3898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 16265259 - 16265295
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  16265259 gtcaactaggtcatttattgagggacggagggagtat 16265295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 16266388 - 16266424
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  16266388 gtcaactaggtcatttattgagggacggagggagtat 16266424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 26441860 - 26441896
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  26441860 gtcaactaggtcatttattgagggacggagggagtat 26441896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 43680296 - 43680332
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  43680296 gtcaactaggtcatttattgagggacggagggagtat 43680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3901313 - 3901407
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttta 95  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  3901313 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtatttttta 3901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46212524 - 46212613
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  46212524 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtatt 46212613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 46803718 - 46803630
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  46803718 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 46803630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 4264217 - 4264134
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  4264217 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagta 4264134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18360147 - 18360234
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||    
T  18360147 agagaattgaagatatcaaagataaaacatatgcattggtacgtgcgtcagagtcaactaggtcatctattgagggacggagggagta 18360234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36602781 - 36602694
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||    
T  36602781 agagaattgaagatatcaaagataaaacatatgcattggtacgtgcgtcagagtcaactaggtcatctattgagggacggagggagta 36602694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39786530 - 39786617
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  39786530 agagaattgaagatatcaaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 39786617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 45198514 - 45198608
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttta 95  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||    
T  45198514 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtatatttta 45198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5735358 - 5735270
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||||||    
T  5735358 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtat 5735270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28166361 - 28166273
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||||||    
T  28166361 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtat 28166273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47579374 - 47579286
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| | |||||||||||||||    
T  47579374 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtaagagtcaactaggtcatttatttagggacggagggagtat 47579286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3442518 - 3442605
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||||||||||||||    
T  3442518 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagta 3442605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4209450 - 4209363
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  4209450 agagaattgaagatatcaaagataaaacatatgtattggtacgtgtgtcagagtcaactagatcatctattgagggacggagggagta 4209363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23256022 - 23255935
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  23256022 agagaattgaagatatcaaatataaaatatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 23255935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28152078 - 28151988
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  28152078 agagaattgaagatatcaaatataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggaggattt 28151988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 55190892 - 55190978
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||||| |||||||    
T  55190892 aattgaagatatcaaagataaaacatatgcattggtaagtgtgtcagagtcaactaggtcatctattgagggacggaggaagtattt 55190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26205878 - 26205967
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||| | ||||||||||||||||    
T  26205878 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtaagagtcaactagatcatttatttagggacggagggagtatt 26205967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 5123335 - 5123419
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||| |||||||||||    
T  5123335 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaagtcatctattgagggatggagggagtat 5123419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5744257 - 5744344
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  5744257 agagaattgaagatatcaaagataaaacatatacattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 5744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6494675 - 6494582
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttt 94  Q
    |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| ||| | ||||||||| |||| |||||    
T  6494675 agagaattgaagatattaaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagtaattttt 6494582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 7738993 - 7739081
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| | ||||||| |||||||    
T  7738993 agagaattgaatatatcaaagataaaacatatgcattgatacgtgtgtcggagtcaactaggtcatttatttagggacggatggagtat 7739081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1377119 - 1377032
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||| ||| | ||||||||    
T  1377119 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcatagtcaactacgtcatttattgaaggatgaagggagta 1377032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21859093 - 21859180
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  21859093 agagaattgaaaatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21914956 - 21915043
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  21914956 agagaattgaaaatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19652429 - 19652519
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||  ||||| ||||||||| |||||||    
T  19652429 agagaattgaagatatcaaagataaaacatatgaattggtacgtatgtcggagtcaactagatcatatattgagggacggaggaagtattt 19652519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37688207 - 37688289
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagg 83  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||| | |||||||||    
T  37688207 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcatctagatcatttatttagggacggagg 37688289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 19525890 - 19525975
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |   ||||||||||||||    
T  19525890 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttaatataggacggagggagta 19525975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19731339 - 19731404
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19731339 agagcattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 19731404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50033107 - 50033042
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  50033107 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaagtcat 50033042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19634022 - 19634110
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||  ||| | ||||| |||||||||    
T  19634022 agagaattgaagatatcaaagataaaacatatgaattggtacgtgtgtcggagtcaactagatcatctattaagggacgaagggagtat 19634110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6923114 - 6923180
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  6923114 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 6923180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25644446 - 25644380
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  25644446 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 25644380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19631395 - 19631330
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  19631395 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaattaagtcat 19631330  T

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Target: chr4; HSP #34
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49768532 - 49768447
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggag 86  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||| |||||| ||| | ||||||||||||    
T  49768532 agagaattgaagatatcaaagataaaacatatgcattgatatgtatgtcatagtcaactaagtcatttatttagggacggagggag 49768447  T

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Target: chr4; HSP #35
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3443561 - 3443617
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaa 57  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3443561 agagaattgaagatatcaaagataaaacatatgcatttgtacgtgtgtcagagtcaa 3443617  T

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Target: chr4; HSP #36
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 19170713 - 19170801
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||  |||||||||||||||  ||||| |||||||| ||||||    
T  19170713 agagaattgaagatattaaagataaaatatatgcattggtacatgtgtcgaagtcaactaggtcatctattgagggacggagcgagtat 19170801  T

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Target: chr4; HSP #37
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39260305 - 39260392
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||  ||||| |||| ||||||||||    
T  39260305 agagaattgaagatatcaaagataaaatatatgtattggtacatgtgtcagagtcaactagatcatctattgagggac-gagggagtat 39260392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 23603825 - 23603880
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23603825 aattgaagatatcaaagataaaacagatgcattggtacgtgtgtcagagtcaacta 23603880  T

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Target: chr4; HSP #39
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50035626 - 50035561
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  50035626 agagaattgaagatttcaaagataaaacatatgcattgatacgtgtgtcggagtcaactagatcat 50035561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 53568439 - 53568375
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||    
T  53568439 agaattgaagatatcaaagataaaacatatgcattgatatgtgtgtcggagtcaactaggacatt 53568375  T

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Target: chr4; HSP #41
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42187153 - 42187212
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  42187153 agagaattaaagatatcaaagataaaatatatgcattggtacgtatgtcagagtcaacta 42187212  T

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Target: chr4; HSP #42
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 55997201 - 55997146
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtca 56  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  55997201 agagaattgaagatatcaaagataaaacgtatgcattggtacgtgtgtcggagtca 55997146  T

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Target: chr4; HSP #43
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20678761 - 20678843
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagg 83  Q
    ||||||||||| ||||||||||||||| |||||||||| ||  |||||||||||||||||| ||||| ||| | |||||||||    
T  20678761 agagaattgaaaatatcaaagataaaatatatgcattgatatatgtgtcagagtcaactagatcatttatttagggacggagg 20678843  T

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Target: chr4; HSP #44
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 55014345 - 55014287
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggt 63  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  55014345 aattgaatatatcaaagataaaacatatgcattagtacgtgtgtcggagtcaactaggt 55014287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26659927 - 26659862
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||| ||||||||||||| || ||| |||||| ||||||||||||||||    
T  26659927 agagaattgaagatatcaaagctaaaacatatgcagtgatacatgtgtcggagtcaactaggtcat 26659862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 51737130 - 51737189
Alignment:
Q  4 gaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggt 63  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  51737130 gaattgaaaatataaaagataaaacatatgcattggtacgtgtgtcggagtcaacaaggt 51737189  T

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Target: chr4; HSP #47
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 553
Target Start/End: Original strand, 1797194 - 1797345
Alignment:
Q  403 aaaacaagttgcatttatttccattattgcaacaattttgtttgcttgtgaaacaaggggttgcaaaatttacata--ctatacaaagtgtattgtatcg 500  Q
    |||| ||||||||||||||| |||| || ||||||||||||| | |  || || |||||| | | |||||||||||   |||||||| |||||||||| |    
T  1797194 aaaaaaagttgcatttattttcattgttacaacaattttgttagttgatggaaaaaggggctac-aaatttacatattatatacaaaatgtattgtattg 1797292  T
Q  501 ttattgagatgactttgttgagaaatatgatagtctaaagaattgcaaccaat 553  Q
    | |||||| | || |||| ||||||| ||||||| ||||||||| ||||||||    
T  1797293 tgattgagttaacattgtagagaaatctgatagtgtaaagaattacaaccaat 1797345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50971546 - 50971491
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaa 57  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  50971546 agagaattaaatatatcaaa-ataaaacatatgcattggtacgtgtgtcagagtcaa 50971491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 1797040 - 1797110
Alignment:
Q  280 ctcagttatagatcatgccatgtcttcaaagctttcaagtat---aaaaatacaaaccttgcctctctttg 347  Q
    |||||||||||| ||||||||||||||||  |||||||||||   ||||||||||| |||| |||||||||    
T  1797040 ctcagttatagaccatgccatgtcttcaagactttcaagtataaaaaaaatacaaatcttgtctctctttg 1797110  T

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Target: chr4; HSP #50
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 14958078 - 14958030
Alignment:
Q  18 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  14958078 aaagatataaaatatgcattggtatgtgtgtcagagtcaactaggtcat 14958030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39195672 - 39195720
Alignment:
Q  18 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||| |||||||||| || ||||||||||||||||||||||||    
T  39195672 aaagataaaaaatatgcattgatatgtgtgtcagagtcaactaggtcat 39195720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 10181071 - 10181017
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    ||||||| |||| |||||||||||||||| ||||||| ||||| |||||||||||    
T  10181071 aattgaaaatattaaagataaaacatatgtattggtatgtgtgacagagtcaact 10181017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27976744 - 27976780
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcatt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  27976744 agagaattgaagatattaaagataaaacatatgcatt 27976780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 31486364 - 31486308
Alignment:
Q  10 aagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||| ||| |||||| ||||||||| ||| |||||| |||||||||||||||||    
T  31486364 aagatattaaaaataaaagatatgcattagtatgtgtgttagagtcaactaggtcat 31486308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39193999 - 39193941
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    |||||||  ||||||| |||||||||| |||||||||| ||  ||||||||||||||||    
T  39193999 agagaatgaaagatattaaagataaaagatatgcattgatatatgtgtcagagtcaact 39193941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 25644585 - 25644621
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  25644585 gtcaactaggtcatttattgaaggacggagggagtat 25644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41391 - 41478
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  41391 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagta 41478  T

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Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 13138306 - 13138393
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  13138306 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatttattgagggacagagggagta 13138393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38845287 - 38845197
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  38845287 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtattt 38845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40013738 - 40013649
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  40013738 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattaagggacggagggagtatt 40013649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29791029 - 29790942
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  29791029 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 29790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3293276 - 3293370
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttta 95  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  3293276 agagaattgaagatatcaaagataaaacatatgcattggtatatgtgtcagagtcaactagatcatttatttagggacggagggagtatttttta 3293370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30290011 - 30289923
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| | |||||||||||||||    
T  30290011 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcagagtcaactaggtcatttatttagggacggagggagtat 30289923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1580939 - 1581026
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  1580939 agagaattgaagatatcaaagataaaatatatgcattgatacgtgtgtcagagtcaactaggtcatttattcagggacggagggagta 1581026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6470932 - 6470845
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||||| |||||||    
T  6470932 agagaattgaagatatcaaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcatatattgagggacggtgggagta 6470845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38739744 - 38739657
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  38739744 agagaattgaagatattaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggagta 38739657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 45081899 - 45081812
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||||    
T  45081899 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 45081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2805650 - 2805739
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||||||||||    
T  2805650 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcagagtcaactgggtcatttatttagggacggagggagtatt 2805739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 43066212 - 43066127
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| ||||    
T  43066212 agaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggtagta 43066127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8351054 - 8351142
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| | |||||||||||||||    
T  8351054 agagaattgaagatatcaaagataaaacatatgcactggtacgtgtgtcagagtcaactagatcacttatttagggacggagggagtat 8351142  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37709986 - 37709898
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||| | |||||||||||||||    
T  37709986 agagaattgaagatatcaaagataaaacatatacattggtatgtgtgttagagtcaactaggtcatttatttagggacggagggagtat 37709898  T

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Target: chr8; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30380617 - 30380527
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | ||| | |||||||||||||||||    
T  30380617 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaattagatcacttatttagggacggagggagtattt 30380527  T

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Target: chr8; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2986425 - 2986337
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| |  |||||||||||||||    
T  2986425 agagaattgaagatatcaa-gataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttattcagagacggagggagtatt 2986337  T

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Target: chr8; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 886241 - 886306
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  886241 agagaattaaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaaccaggtcat 886306  T

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Target: chr8; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12893618 - 12893559
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  12893618 agagaattgaagatatcaaagataaaacatatgcattgatacgtgtgtcggagtcaacta 12893559  T

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Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31127979 - 31128038
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  31127979 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaacta 31128038  T

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Target: chr8; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 14522467 - 14522377
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||| ||||  ||||| ||| | |||||||||||    
T  14522467 agagaattgaagatatcaaagataaaacatatgcattgatacgtgtgttaaaatcaactagatcatctattgagggatgaagggagtattt 14522377  T

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Target: chr8; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18809363 - 18809297
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  18809363 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaactcaactagatcatt 18809297  T

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Target: chr8; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45253837 - 45253747
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgt-gtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||  ||| | |||| |||||||||||    
T  45253837 agagaattgaagatatcaaaaataaaacatatgcattggtacgtgtcgtcggagtcaactagatcatctattaagggacagagggagtatt 45253747  T

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Target: chr8; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 14847295 - 14847210
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||  || || ||||| ||||||||    
T  14847295 agaattaaagatatcaaagataaaacatatgcattggtgcgtgtgtcggaatcaactaggtcatctatcgagggacgtagggagta 14847210  T

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Target: chr8; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23248864 - 23248779
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggag 86  Q
    ||||||||||| |||||||||||||||||||||||||| ||  ||||| |||||||||||||||||| ||| | ||| ||||||||    
T  23248864 agagaattgaatatatcaaagataaaacatatgcattgatatatgtgttagagtcaactaggtcatttatttaaggagggagggag 23248779  T

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Target: chr8; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44123760 - 44123695
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  44123760 agagaattgaagatttcaaagataaaacatatgcattgatacgtgtgtcggagtcaactagatcat 44123695  T

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Target: chr8; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39361212 - 39361158
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtc 55  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  39361212 agagaattgaagatatcaaaaataaaacatatgcattggtatgtgtgtcagagtc 39361158  T

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Target: chr8; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10658065 - 10658000
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||| |||||||||| |||||    
T  10658065 agagaattgaagatatcaaagataaaacatatgtgttggtacatgtgtcggagtcaactaagtcat 10658000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11854611 - 11854551
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactag 61  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||  ||||||||||    
T  11854611 agagaattgaagatatcaaaaataaaatatatgcattggtacgtgtgtcgaagtcaactag 11854551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25256421 - 25256355
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||| ||||||||||   ||||| ||||||||||| |||||    
T  25256421 agagaattgaagatatcaaagataaaacatttgcattggtataagtgtcggagtcaactagatcatt 25256355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 9302528 - 9302592
Alignment:
Q  2 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||| ||||  || ||||| ||||||||| ||||||||    
T  9302528 gagaattgaagatatcaaagataaaacatatacatttatatgtgtgccagagtcaattaggtcat 9302592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23764625 - 23764713
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacg-tgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||||  |||||||||| | ||| || || |||||||| |||||    
T  23764625 agagaattgaatatatcaaatataaaacatatgcattggtacgttgtgtcgaagtcaactagattatttatcgagggacggagagagta 23764713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 25173848 - 25173902
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    |||||||||||| |||||||||||||||| ||||||| | ||| |||| ||||||    
T  25173848 aattgaagatattaaagataaaacatatgtattggtatgcgtgacagaatcaact 25173902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 42785981 - 42785920
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| ||| ||| |||||||||  |||||||||||||  |||||| ||||||||||||||||    
T  42785981 aattaaagttattaaagataaataatatgcattggtatatgtgtctgagtcaactaggtcat 42785920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 547090 - 547034
Alignment:
Q  126 aaaacttacttattttagatgcttaatcaatgtctctatgacactctttagcattct 182  Q
    ||||| ||||| |||||||| |||||||||||||  |||| ||||| ||||||||||    
T  547090 aaaacgtacttgttttagatacttaatcaatgtcattatggcactcgttagcattct 547034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 1342353 - 1342325
Alignment:
Q  123 atgaaaacttacttattttagatgcttaa 151  Q
    |||||||||||||||||||||||||||||    
T  1342353 atgaaaacttacttattttagatgcttaa 1342325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 18809502 - 18809538
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  18809502 gtcaactaggtcatttattgagggacggagggagtat 18809538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 31127840 - 31127804
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  31127840 gtcaactaggtcatttattgagggacggagggagtat 31127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41463691 - 41463777
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  41463691 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatttattgagggacggagggagt 41463777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14372164 - 14372076
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  14372164 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 14372076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23671463 - 23671375
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  23671463 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 23671375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7443065 - 7443152
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||    
T  7443065 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 7443152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 40425423 - 40425513
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| | |||||||||||||||||    
T  40425423 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagtattt 40425513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42038610 - 42038521
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  42038610 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagtatt 42038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18718326 - 18718238
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  18718326 agagaattgaagatatcaaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 18718238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34826999 - 34826911
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  34826999 agagaattgaagatatcaaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 34826911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 41172935 - 41173027
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttatg 97  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||| |||||||    
T  41172935 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaagtaggtcatttatttagggacggagggagtatgttttatg 41173027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 14707710 - 14707792
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggaggga 85  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||    
T  14707710 agaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 14707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30708815 - 30708727
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||||||    
T  30708815 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcaaagtcaactaggtcacttattcagagacggagggagtat 30708727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32776074 - 32776162
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||  ||| | |||||||||||||||    
T  32776074 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtatcggagtcaactaggtcatctattaagggacggagggagtat 32776162  T

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Target: chr2; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3987406 - 3987493
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  3987406 agagaattgaagatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 3987493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20517506 - 20517411
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttat 96  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| ||| |  ||||||||||||||| |||||    
T  20517506 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaattatgtcatttatttagagacggagggagtattatttat 20517411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44283453 - 44283540
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||    
T  44283453 agagaattgaagatatcaaagataaaatatatgcattggtatgtgtgtcagaatcaactaggtcatttatttaaggacggagggagta 44283540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 44330471 - 44330384
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||| ||||||    
T  44330471 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagta 44330384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4045407 - 4045497
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||||| ||| | |||||||||||||||||    
T  4045407 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaaccaaatcatttatttagggacggagggagtattt 4045497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9877257 - 9877345
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  9877257 agagaattaaagatatcaaagataaaacatatgcattcacacgtgtgtcagagtcaactaggtcatctattgagggacggagggagtat 9877345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27559662 - 27559575
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  27559662 agagaattgaagatatcaaagataaaacatatacattgatatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 27559575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16941985 - 16942072
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |  |||||||| ||||    
T  16941985 agagaattgaatatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 16942072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17012650 - 17012737
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |  |||||||| ||||    
T  17012650 agagaattgaatatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 17012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 40598215 - 40598128
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| | |   ||||||||||||||    
T  40598215 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 40598128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 38963606 - 38963518
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||||||||||  ||| | | |||||||||||||    
T  38963606 agagaattgaagaaatcaaagataaaacatatgcattggtacgtgtgtcgaagttaactaggtcatctattaaggaacggagggagtat 38963518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36199125 - 36199191
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  36199125 agagaatcgaagatatcaaagataaaacatatgcattagtatgtgtgtcagagtcaactagatcatt 36199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 38137707 - 38137769
Alignment:
Q  4 gaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  38137707 gaattgaagatatcaaagataaaacatatgcatttgtacgtgtgtcggagtcaactagatcat 38137769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40898727 - 40898662
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||    
T  40898727 agagaattgaagatatcaaagataaaacatatacattagtacgtgtgtcggagtcaactagatcat 40898662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 38588072 - 38588143
Alignment:
Q  10 aagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacgga 81  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| | |||||||    
T  38588072 aagatatcaaagataaaacatatgcattggtatgtgtatcagagtcaactagatcatttatttagggacgga 38588143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24283132 - 24283210
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacg 79  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||| ||  ||||||||||||  ||||| |||||    
T  24283132 agagaattgaagatatcaaagataaaacatatgcatcagtacgtgtgtcggaaacaactaggtcatctattgagggacg 24283210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 332363 - 332300
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||    
T  332363 agagaattgaagatatcaaagataaaacatatgcgttggtac--gtgtcggagtcaaataggtcat 332300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13399279 - 13399344
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||||||| |||||    
T  13399279 agagaattgaagatataaaaaataaaacgtatgcattggtacatgtatcagagtcaactaagtcat 13399344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 4045933 - 4045849
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||  ||||  ||||| | | |||||||||||    
T  4045933 aattaaagatatcaaagataaaacatatgcattagtacgtatgtcagaatcaactaaatcatctattgaggaatggagggagtat 4045849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 4083292 - 4083229
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||| ||||||| ||||||||||||||||||||| || ||||||| ||||||||||| ||||    
T  4083292 agaattaaagatattaaagataaaacatatgcattgatatgtgtgtcggagtcaactagctcat 4083229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30776367 - 30776405
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattgg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30776367 agagaattgaagatatcaaagataaaacatatgcattgg 30776405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 39418198 - 39418259
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||  |||||||||| ||||    
T  39418198 aattgaagatatcaaagataaaatatatgtattggtaagtgtgtcgaagtcaactagatcat 39418259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43925255 - 43925300
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgt 46  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  43925255 agagaattgaagatatcaaagataaaacatatgcattagttcgtgt 43925300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5030462 - 5030510
Alignment:
Q  18 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  5030462 aaagataaaaaatatgcattggtatgtgtgtcaaagtcaactaggtcat 5030510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 42951425 - 42951362
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||| ||| |||||||| ||||||||||| ||||| |||||||||| ||||||||||| ||||    
T  42951425 agaatagaaaatatcaaaaataaaacatatacattgatacgtgtgtcggagtcaactagatcat 42951362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 17641205 - 17641174
Alignment:
Q  123 atgaaaacttacttattttagatgcttaatca 154  Q
    ||||||||||||||||||||||||||||||||    
T  17641205 atgaaaacttacttattttagatgcttaatca 17641174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 4652121 - 4652179
Alignment:
Q  126 aaaacttacttattttagatgcttaatcaatgtctctatgacactctttagcattctcc 184  Q
    |||||||||||||||||  ||||||||||||| |||||  |||||  ||||||||||||    
T  4652121 aaaacttacttattttatttgcttaatcaatgcctctaaaacactaattagcattctcc 4652179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 7106361 - 7106329
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcatt 37  Q
    ||||||||||| |||||||||||||||||||||    
T  7106361 aattgaagatagcaaagataaaacatatgcatt 7106329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 13717209 - 13717181
Alignment:
Q  123 atgaaaacttacttattttagatgcttaa 151  Q
    |||||||||||||||||||||||||||||    
T  13717209 atgaaaacttacttattttagatgcttaa 13717181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37951119 - 37951207
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  37951119 agagaattgaagatatcaaagataaaacatatgcattggtatgtgcgtcagagtcaactaggtcatttatttatggacggagggagtat 37951207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36819783 - 36819696
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  36819783 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 36819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 31466534 - 31466619
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||    
T  31466534 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 31466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 19072856 - 19072769
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||    
T  19072856 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagta 19072769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42086812 - 42086899
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||    
T  42086812 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 42086899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 47081067 - 47080980
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  47081067 agagaatttaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcattcatttagggacggagggagta 47080980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2400372 - 2400274
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttatgta 99  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| | ||||||||||||||| ||| |||||    
T  2400372 agagaatggaagatatcaaagataaaacatatgcattggtatatgtgtcagagtcaactaggtcatttatttagggacggagggagtatatttgatgta 2400274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 44479894 - 44479983
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||||||    
T  44479894 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggaggaagtatt 44479983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28185582 - 28185670
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  28185582 agagaattaaagatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtat 28185670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 21392105 - 21392018
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| |||| |||||||||    
T  21392105 agagaattaaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcatctattgaaggacagagggagta 21392018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23474143 - 23474230
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| | ||||||| ||||||    
T  23474143 agagaattgaagatatcaaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcacttatttagggacggaaggagta 23474230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 47713680 - 47713763
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  47713680 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32619116 - 32619204
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||| ||| | |||||||||||||||    
T  32619116 agagaattgaagatatcaaaaataaaacatatgcattgatatgtgtgtcagagtcaactaagtcatttatttagggacggagggagtat 32619204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36859382 - 36859470
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||| | | |||||||||||||    
T  36859382 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgttagagtcaattaggtcatttatttaggaacggagggagtat 36859470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36905613 - 36905526
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| ||| | ||||||||||||||    
T  36905613 agagaattgaagatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactaaatcatttatttagggacggagggagta 36905526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10464289 - 10464348
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10464289 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcaaagtcaacta 10464348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34478185 - 34478272
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| | |   ||||||||||||||    
T  34478185 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggttatttaatatgggacggagggagta 34478272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37231738 - 37231825
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| | |   ||||||||||||||    
T  37231738 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 37231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 48531409 - 48531320
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||  ||||| | |||||||| |||||    
T  48531409 agagaattgaagatatcaaagataaaatatatgcattgatacgtgtgtcagagtcaactaaatcatctattgaggaacggagggggtatt 48531320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31110709 - 31110625
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagt 87  Q
    ||||||||||| ||||||||||||||||||||||||||  |  |||||||||||||||||||||||| ||| | |||||||||||||    
T  31110709 agagaattgaaaatatcaaagataaaacatatgcattg--agatgtgtcagagtcaactaggtcatttatttagggacggagggagt 31110625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35500921 - 35501008
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| ||||| | |   ||||||||||||||    
T  35500921 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagttaactagatcatttaatatgggacggagggagta 35501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 4612263 - 4612349
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||| |||||| |||||||||||||  |||||||||||||||| ||||||| ||| | ||||| |||||||||    
T  4612263 agaattgaagatatcaaacataaaatatatgcattggtatttgtgtcagagtcaactgggtcatttatttagggacgtagggagtat 4612349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36643249 - 36643183
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| |||||    
T  36643249 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaattagatcatt 36643183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 47538010 - 47537932
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| ||||| |||||    
T  47538010 agagaattgaagatatcaaagataaaacatatgcattggtacgtatatcagaatcaattagatcatttattgagggacg 47537932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 42834468 - 42834553
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||| |||||| ||||||||| ||| |  |||||||||||||    
T  42834468 agaattgaagatatcaaagataaaacatatacattggtatgtgtatcaaagtcaaataggtcatttatttagagacggagggagta 42834553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 47713774 - 47713840
Alignment:
Q  22 ataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  47713774 ataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 31497881 - 31497939
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggt 63  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||    
T  31497881 aattgaagatatcaaagataaaacatatgtattagtatgtgtgtcggagtcaactaggt 31497939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2450776 - 2450706
Alignment:
Q  1 agagaattgaagatatcaaagataaaa-catatgcattggtacgtgtgtcagagtcaactaggtcattaat 70  Q
    |||||||||||||||| |||||||||| |||||||||||||||  ||||| |||| ||||||||| |||||    
T  2450776 agagaattgaagatattaaagataaaaacatatgcattggtacaggtgtcggagtaaactaggtctttaat 2450706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 27916677 - 27916616
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||  || |||||||||||||    
T  27916677 aattgaagatatcaaaaataaaacatatacattggtacatgtgttggactcaactaggtcat 27916616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18795314 - 18795362
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtc 49  Q
    |||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  18795314 agagaatttaagatatcaaagataaaacatatacattagtacgtgtgtc 18795362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 4033366 - 4033313
Alignment:
Q  13 atatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| |||||||||| |||||||||| || ||||||||||||||||||| ||||    
T  4033366 atattaaagataaaaaatatgcattgatatgtgtgtcagagtcaactagatcat 4033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 38198556 - 38198503
Alignment:
Q  13 atatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| |||||||||| |||||||||| || |||| |||||||||||||||||||    
T  38198556 atattaaagataaaaaatatgcattgatatgtgtatcagagtcaactaggtcat 38198503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39982288 - 39982341
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagt 54  Q
    |||||||||||||||| ||||||||||||||||||||  || ||||| ||||||    
T  39982288 agagaattgaagatattaaagataaaacatatgcattattatgtgtgacagagt 39982341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29770648 - 29770708
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactag 61  Q
    |||| ||||||||||||||| |||||| |||||||| ||||||| ||||  ||||||||||    
T  29770648 agagcattgaagatatcaaaaataaaaaatatgcatcggtacgtatgtcgaagtcaactag 29770708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 33613286 - 33613238
Alignment:
Q  18 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||||||||    
T  33613286 aaagttaaaacatatgcattggtatgcgtgtcggagtcaactaggtcat 33613238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 10464150 - 10464114
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  10464150 gtcaactaggtcatttattgagggacggagggagtat 10464114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 36643965 - 36644001
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  36643965 gtcaactaggtcatttattgagggacggagggagtat 36644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 42493806 - 42493862
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    |||||| ||||||| |||||||||| |||| ||||| || ||||| |||||||||||    
T  42493806 agaattaaagatattaaagataaaaaatatacattgatatgtgtgacagagtcaact 42493862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4925012 - 4925100
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||    
T  4925012 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagggtcaactaggtcatctattgagggacggagggagtat 4925100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29627355 - 29627263
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttt 93  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  29627355 agagaattgaagatatcaaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagtattttt 29627263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35290373 - 35290285
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  35290373 agagaattgaagatatcaaagataaaatatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagtat 35290285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35448171 - 35448258
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  35448171 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 35448258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37516231 - 37516144
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  37516231 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcatctattgagggacggagggagta 37516144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38698050 - 38697960
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  38698050 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaattaggtcatttatttagggacggagggagtattt 38697960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5213096 - 5213185
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||    
T  5213096 agagaattgaagatattaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagtatt 5213185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40512854 - 40512947
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttt 94  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | |||||||||||||| |||||    
T  40512854 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagtacttttt 40512947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 23988662 - 23988579
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  23988662 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 23988579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 42148394 - 42148307
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  42148394 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 42148307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 32334815 - 32334901
Alignment:
Q  2 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||| |||||||||    
T  32334815 gagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacagagggagta 32334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37843749 - 37843838
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| || |||||||    
T  37843749 agagaattgaagatatcaaatataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacgaagagagtatt 37843838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39036497 - 39036409
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||  ||||||||||||||    
T  39036497 agagaattgaagatatcaaagataaaacatatacattggtacgtgtgtcagagtcaactatgtcatctattgagagacggagggagtat 39036409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41411332 - 41411419
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||  ||||| ||||||||||||||    
T  41411332 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactaagtcatctattgagggacggagggagta 41411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5364507 - 5364421
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagt 87  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | |||||||||||||    
T  5364507 agagaattgaatatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagt 5364421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32002188 - 32002277
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||| ||| | ||||||||||||||||    
T  32002188 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcagagtcaagtagatcatttatttaaggacggagggagtatt 32002277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39894868 - 39894779
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | ||| | ||||||||||||||||    
T  39894868 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcagagtcaactagatcacttatttagggacggagggagtatt 39894779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1830741 - 1830654
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||  ||||| ||||||||||||||    
T  1830741 agagaattgaagatatcaaagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatctattgagggacggagggagta 1830654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 40316208 - 40316121
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||  ||||| ||||||||||||||    
T  40316208 agagaattgaagatatcaaagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatctattgagggacggagggagta 40316121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 30779922 - 30780016
Alignment:
Q  4 gaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattttttatgt 98  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||| | |||||||||||| | |||||||    
T  30779922 gaattgaagatatgaaagataaaacatatgtattggtacgtgtgtcggagtcaactaggtcatctattgaggaacggagggagtaatatttatgt 30780016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43517234 - 43517324
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtattt 91  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| || |||| | |||||||    
T  43517234 agagaattgatgatatcaaagataaaacatatgcattagtacgtgtgtcagagtcaactaggtcatctattgaggggcggatgaagtattt 43517324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14475408 - 14475473
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  14475408 agagaattgaagatatcaaagataaaacatatgcatttgtacgtgtgtcggagtcaactaggtcat 14475473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19889741 - 19889678
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtc 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  19889741 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtatcggagtcaactaggtc 19889678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4300006 - 4300072
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  4300006 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 4300072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16048170 - 16048104
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  16048170 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 16048104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42421772 - 42421707
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  42421772 agagaattgaagatatcaaagataaaacatatgcataggtacgtgtgtcggagtcaactagatcat 42421707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 43067314 - 43067250
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  43067314 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 43067250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 970225 - 970159
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  970225 agagaattgaagataacaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 970159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 22613887 - 22613949
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  22613887 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtctaagtcaactagatcatt 22613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 39405851 - 39405764
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||| ||||| | |   ||||||||||||||    
T  39405851 agagaattgaagatattaaagataaaacatatgcattggtacgtgtctcgaagtcaactagatcatttaatatgggacggagggagta 39405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 16954749 - 16954688
Alignment:
Q  29 atatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    |||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||    
T  16954749 atatgcattggtacgtgtgtcagagtcaactaagtcatctattgagggacggagggagtatt 16954688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 25563583 - 25563522
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||    
T  25563583 aattgaagatatcaaagataaaacatatgcattggaacgtgtgttgaagtcaactaggtcat 25563522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 19087946 - 19088009
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| |||||    
T  19087946 agaattgaagatatcataaataaaacttatgcattggtacgtgtgtcggagtcaactacgtcat 19088009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 19868863 - 19868918
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  19868863 aattgaaaatagcaaagataaaacatatgcattggtacgtgtgtcggagtcaacta 19868918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15268197 - 15268138
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||| ||| ||||||||||||||||  |||||||||| ||||||||||    
T  15268197 agagaattgaagatattaaaaataaaacatatgcattaatacgtgtgtcggagtcaacta 15268138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24520295 - 24520242
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtc 55  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||    
T  24520295 agagaattgaagatatcaaa-ataaaacatatacattgatacgtgtgtcggagtc 24520242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2864041 - 2863976
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||| | |||  |||||||| |||| | ||||||||||| ||||    
T  2864041 agagaattgaagatatcaaagataaagcgtatatattggtacatgtgacggagtcaactagatcat 2863976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 21961310 - 21961256
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaact 59  Q
    |||| ||||||| |||||||||||||||| |||| || ||||| |||||||||||    
T  21961310 aattaaagatattaaagataaaacatatgaattgatatgtgtgacagagtcaact 21961256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 35448032 - 35447991
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtatttttt 94  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  35448032 gtcaactaggtcatttattaagggacggagggagtatttttt 35447991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 970364 - 970400
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  970364 gtcaactaggtcatttattgagggacggagggagtat 970400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 4299868 - 4299832
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  4299868 gtcaactaggtcatttattgagggacggagggagtat 4299832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 22613744 - 22613708
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  22613744 gtcaactaggtcatttattgagggacggagggagtat 22613708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 37304358 - 37304406
Alignment:
Q  40 tacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||| |||||||||||||||||| | ||| | ||||||||||||||    
T  37304358 tacgtgtatcagagtcaactaggtcacttattcagggacggagggagta 37304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34827409 - 34827321
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||    
T  34827409 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagtat 34827321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 46483638 - 46483550
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||    
T  46483638 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggatggagtat 46483550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18659139 - 18659051
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||||||    
T  18659139 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtat 18659051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7459994 - 7460081
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| ||||    
T  7459994 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagta 7460081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 21907079 - 21906996
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  21907079 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttattgagggacggagggagta 21906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 29728276 - 29728359
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||    
T  29728276 aattgaagatatctaagataaaacatatgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagta 29728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38492139 - 38492052
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||    
T  38492139 agagaattgaagatattaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 38492052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 49057943 - 49057856
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||||| ||||    
T  49057943 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttattgagggacggaggaagta 49057856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10571318 - 10571407
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || || ||||||||||| ||||    
T  10571318 agagaattgaagatatcaaagataaaacatatgtattggtatgtgtgtcagagtcaactaggtcatttatcgagggacggagggactatt 10571407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43137938 - 43137849
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||    
T  43137938 agagaattgaaaatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagtatt 43137849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 54840304 - 54840389
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||    
T  54840304 agaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 54840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8559179 - 8559267
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||| |||||||    
T  8559179 agagaattgaagatattaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggatggagtat 8559267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25097361 - 25097448
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||| | ||||||||||||    
T  25097361 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgttagagtcaactaagtcatctattgaggtacggagggagta 25097448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37832987 - 37832900
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| ||| | ||||||||||||||    
T  37832987 agagaattgaagatatcaaaaataaaacatatgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagta 37832900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 45167386 - 45167299
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||| ||||||    
T  45167386 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggatggagta 45167299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 53066457 - 53066369
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttt 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||||| ||||||||||||||| ||||    
T  53066457 aattgaagatatcaaagataaaacatatgcattggtaagtgtgtcagagtcaacta-gtcatctattgagggacggagggagtatatttt 53066369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1327398 - 1327310
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||| ||| | |||||||||||||||    
T  1327398 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtaagagtcaactagatcatttatttagggacggagggagtat 1327310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38833751 - 38833687
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtca 65  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38833751 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtca 38833687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51062477 - 51062413
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtca 65  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51062477 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtca 51062413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27849039 - 27848952
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||  | ||| ||||||||||||||    
T  27849039 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcaaagtcaactaggtcatctaatgagggacggagggagta 27848952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32285350 - 32285413
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtc 64  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32285350 agagaattgaagatatcaaagataaaacatatgtattggtacgtgtgtcagagtcaactaggtc 32285413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45093807 - 45093748
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45093807 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 45093748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51392466 - 51392532
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  51392466 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtaagagtcaactaggtcatt 51392532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 15503112 - 15503023
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||  ||||| ||||||||||||||||    
T  15503112 agagaattgaatatatcaaagataaaacatatgcattgatacgtatgtcggagtcaattaggtcatctattgagggacggagggagtatt 15503023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 52668660 - 52668746
Alignment:
Q  2 gagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||| ||||||||||||||| |||||||||| || ||||||||||| ||||||||||||| ||| | ||||||||||||||    
T  52668660 gagaattgaaaatatcaaagataaaatatatgcattgatatgtgtgtcagagccaactaggtcatttatttagggacggagggagta 52668746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 3547598 - 3547659
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  3547598 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaattaggtcat 3547659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 9145585 - 9145524
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9145585 aattcaagatatcaaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 9145524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28690603 - 28690538
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  28690603 agagcattgaagatatcaaagataaaacatatgcattggtatgtgtgtcggagtcaactaggtcat 28690538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 10437367 - 10437304
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  10437367 agaattgaagatatcaaagataaaacatataaattggtacgtgtgtcagagtcaactaagtcat 10437304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 35718033 - 35718088
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35718033 aattgaagatatcaaggataaaacatatgcattggtacgtgtgtcagagtcaacta 35718088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48707017 - 48707104
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||  ||| | ||| | ||||||||||||||    
T  48707017 agagaattgaagatatcaaagataaaacatatgcattggtatgtatgtcagaatcaactaaatcacttatttagggacggagggagta 48707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4238794 - 4238860
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  4238794 agagaattgaagatattaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 4238860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10435221 - 10435155
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  10435221 agagaattgaagatattaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 10435155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 17052947 - 17052885
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  17052947 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatt 17052885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32951310 - 32951397
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||| ||||| | |   ||||||||||||||    
T  32951310 agagaattgaagataccaaagataaaacatatgcattggtatgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 32951397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47638142 - 47638060
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagg 83  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| || |||||  |||||  ||||||||    
T  47638142 agagaattgaagatattaaagataaaacatatgcattggtacgtgtatcagaatcaattaagtcatctattgagtgacggagg 47638060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7671487 - 7671552
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| || |||||||||||||    
T  7671487 agagaattgaagatatcaaagataaaacatatgcattgatacatgcgtctgaatcaactaggtcat 7671552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36665106 - 36665041
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||    
T  36665106 agagaaatgaagatatcaaagataaaacatatgcattggtacgtgtatcggagtcaattaagtcat 36665041  T

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Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 52550797 - 52550855
Alignment:
Q  8 tgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||||||| ||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  52550797 tgaagatatcgaagataaaacatatgcattagtacgtatgtcggagtcaactaagtcat 52550855  T

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Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 16365449 - 16365481
Alignment:
Q  29 atatgcattggtacgtgtgtcagagtcaactag 61  Q
    |||||||||||||||||||||||||||||||||    
T  16365449 atatgcattggtacgtgtgtcagagtcaactag 16365481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 48143849 - 48143786
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||||| |||||||||||||| |||||| ||||||| | ||||| ||||||||||| |||||    
T  48143849 agaattgaa-atatcaaagataaaccatatgtattggtatgagtgtcggagtcaactagatcatt 48143786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 10435345 - 10435381
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtat 89  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  10435345 gtcaactaggtcatttattgagggacggagggagtat 10435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 39435228 - 39435296
Alignment:
Q  20 agataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||| ||||| |||||||  ||||||||| |||||||||||||  | | | ||||||||||||||    
T  39435228 agataaaaaatatgtattggtatatgtgtcagaatcaactaggtcatctaataagggacggagggagta 39435296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 643605 - 643692
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  643605 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 643692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11114652 - 11114565
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||    
T  11114652 agagaatcgaagatatcaaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggagggagta 11114565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33121629 - 33121542
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| | ||||||||||||||    
T  33121629 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttattaagggacggagggagta 33121542  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13207127 - 13207192
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13207127 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 13207192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30237253 - 30237165
Alignment:
Q  1 agagaattgaagatatcaaagataaaa-catatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  30237253 agagaatcgaagatatcaaagataaaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 30237165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 18991987 - 18991904
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||    
T  18991987 aattgaagatatcaaaaataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 18991904  T

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Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 22020363 - 22020276
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||| ||||||    
T  22020363 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagta 22020276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31854905 - 31854818
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||| | ||||||||||||||    
T  31854905 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtatcagagtcaactgggtcatttatttagggacggagggagta 31854818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24150828 - 24150739
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| | | ||||| ||||||||    
T  24150828 agagaattgaagatatcaaagataaaatatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaggaacggatggagtatt 24150739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25435498 - 25435410
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| | ||||||||||||||    
T  25435498 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtca-agtcaactagatcatttattgaggaacggagggagtatt 25435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29403731 - 29403644
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| | |||||||| |||||    
T  29403731 agagaattgaagatatcaaagataaaacatacgcattggtatgtgtgtcagagtcaactaagtcatttattaaaggacggagagagta 29403644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29986332 - 29986394
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggt 63  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29986332 agagaattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactaggt 29986394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 7098051 - 7098113
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7098051 aattgaagatatcaaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatt 7098113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 20662233 - 20662321
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtca-ttaattgatggacggagggagta 88  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||| |||| ||||||||| ||||    
T  20662233 agagaattgaagatattaaagataaaacatatgcattggtatgtatgtcagaggcaactaggtcatttatttgagggacggaggaagta 20662321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8796137 - 8796050
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| | ||| ||| | |||||||| |||||    
T  8796137 agagaattaaagatatcaaagataaaacatatacattggtatgtgtgtcagagtcaactagatgatttatttagggacggagtgagta 8796050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25163251 - 25163185
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  25163251 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcgaaatcaactagatcatt 25163185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19068942 - 19069007
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||| || |||| ||||| |||||    
T  19068942 agagaactgaagatatcaaagataaaatatatgtattggtacgtgtatcggagttaactaagtcat 19069007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 16434706 - 16434767
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 66  Q
    |||| ||||||| |||||||| | ||||||||||||| | ||||| ||||||||||| ||||    
T  16434706 aattaaagatattaaagataagaaatatgcattggtatgagtgtctgagtcaactagttcat 16434767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 32134075 - 32134043
Alignment:
Q  125 gaaaacttacttattttagatgcttaatcaatg 157  Q
    ||||||||||||||||||||||||||| |||||    
T  32134075 gaaaacttacttattttagatgcttaaccaatg 32134043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 44282 - 44376
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagtatttttta 95  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  44282 agagaattgaagatatcaaagataaaacatatgcattggtatgcgtgtcagagtcaactaggtcatttatttagggacggagggagtacttttta 44376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14146 - 14059
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| | ||||||||||||||    
T  14146 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtatcagagtcaactaggtcacttatttagggacggagggagta 14059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10480 - 10393
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  10480 agagaattgaagatatcaaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 10393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12839 - 12752
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  12839 agagaattgaagatatcaaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 12752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 117404 - 117321
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| ||||| ||| | ||||||||||||||    
T  117404 aattgaagatattaaagataaaacatatgcattgatatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15390 - 15477
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    |||||||||||||||||||   |||| ||||||||||||||||||||| |||||||||||||||| | ||| | |||| |||||||||    
T  15390 agagaattgaagatatcaacagtaaatcatatgcattggtacgtgtgttagagtcaactaggtcagttattcagggaccgagggagta 15477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 15251 - 15208
Alignment:
Q  53 gtcaactaggtcattaattgatggacggagggagtattttttat 96  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  15251 gtcaactaggtcatttattaagggacggagggagtattttttat 15208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 38538 - 38593
Alignment:
Q  5 aattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaacta 60  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  38538 aattgaagatatcaaagataaaacatatgcattggtacgtatgtcgaagtcaacta 38593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 14430 - 14345
Alignment:
Q  3 agaattgaagatatcaaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcattaattgatggacggagggagta 88  Q
    ||||||||||||||||||||||||||||||| ||| ||| || |||| || |||||||| | ||| ||||| |||| |||||||||    
T  14430 agaattgaagatatcaaagataaaacatatgtattagtaagtatgtcggaatcaactagattatttattgagggaccgagggagta 14345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12620 - 12660
Alignment:
Q  1 agagaattgaagatatcaaagataaaacatatgcattggta 41  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  12620 agagaattgaagatattaacgataaaacatatgcattggta 12660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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