View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_1 (Length: 798)
Name: NF18243_high_1
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 376 - 779
Target Start/End: Complemental strand, 1192649 - 1192236
Alignment:
| Q |
376 |
acatttttcaaaggataataacatccaacaaattggtggtgatatgtgaatcttcctcgaaaagtaacattctaagcaaagtgcctct-------gtaca |
468 |
Q |
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| T |
1192649 |
acatttttcaaaggataataacatccaacaaattggtg---atatgtgaatcttcatcaaaaagtgacattctaagcaaagtgcctctactacaagtaca |
1192553 |
T |
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| Q |
469 |
agaattcaaagagcatctttgaagaccagta-------cagatggactcgaagataagcattcttgaagtcattttagaattcaaattatttcataacta |
561 |
Q |
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| T |
1192552 |
agaattcaaagagaatctttgaagatgagtagaaaatacagatggacttgaagataagcattcttgaagtcatttgagaattcaaattatttcataacta |
1192453 |
T |
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| Q |
562 |
ccataccaaaagtgtgctcagagagttttaaaaaagtagttatgtttggaaagtcttgagcgttcatgaactcaaaataccagaagaaaaagttttttaa |
661 |
Q |
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| T |
1192452 |
ccataccaaaagtgtgctcagagagttttaaagaagtagttatgtttagaaagtcttgagtgttcaagaactcaaaatacgagaagaaaaagttttttaa |
1192353 |
T |
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| Q |
662 |
gctagttagaagacacttgacatgttacaccaaaggagttcattttcacaccaaatgtgtgcatactagattacacnnnnnnnatagtcacttttttgac |
761 |
Q |
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| T |
1192352 |
gctagttagaagacacttgacatgttacaccaaa-gagttcattttcataccaattgtgtgcatattagattacactttttttatagtcacttttttgac |
1192254 |
T |
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| Q |
762 |
ttcatccactgtgtgccc |
779 |
Q |
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| T |
1192253 |
ttaatccactgtgtgccc |
1192236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 1193084 - 1192789
Alignment:
| Q |
15 |
atgaagaagcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggtttttggacacaatatttcttca |
114 |
Q |
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| T |
1193084 |
atgaagaatcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggttcttggacacaatatttcttca |
1192985 |
T |
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| Q |
115 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaattttt |
214 |
Q |
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| T |
1192984 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaattttt |
1192885 |
T |
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| Q |
215 |
agagagacactgcactatatcct--tgaggttgattaataatctctcgagggaattgtcaaacctaaaggatatgatttacgaatccttcgtttgg |
308 |
Q |
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| T |
1192884 |
agacagacaccgcactatatcgtactatatctgattaataatctctcgagggaattgttaaacctaaaaaatacgatttaagaatacttcgtttgg |
1192789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 1192612 - 1192573
Alignment:
| Q |
308 |
gatatgtgaatcttcgtcgaaaagtgacattctaagcaaa |
347 |
Q |
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| T |
1192612 |
gatatgtgaatcttcatcaaaaagtgacattctaagcaaa |
1192573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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