View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_106 (Length: 258)
Name: NF18243_high_106
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_106 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 45565496 - 45565753
Alignment:
| Q |
1 |
acctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatgggg |
100 |
Q |
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| T |
45565496 |
acctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatgggg |
45565595 |
T |
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| Q |
101 |
acatccatttgaacatagaactcctctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttagaga |
200 |
Q |
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| T |
45565596 |
acatccatttgaacatggaactcctctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttacaga |
45565695 |
T |
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| Q |
201 |
attcgcaaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaat |
258 |
Q |
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| T |
45565696 |
attcgcaaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaat |
45565753 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 45286972 - 45286940
Alignment:
| Q |
68 |
ccaatcgttctcatagtttgtttcacaatgggg |
100 |
Q |
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| T |
45286972 |
ccaatcgttctcgtagtttgtttcacaatgggg |
45286940 |
T |
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