View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_high_118 (Length: 243)

Name: NF18243_high_118
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_high_118
NF18243_high_118
[»] chr5 (3 HSPs)
chr5 (19-243)||(28311018-28311242)
chr5 (19-243)||(28306231-28306451)
chr5 (19-239)||(13197356-13197573)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 28311242 - 28311018
Alignment:
Q  19 gatgagttacaaaatttcaactcattaagtttctaagtgcatgtctctgtgatgaacattggtgatttaattagatggaagtcatgttgtgatgttgttg 118  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28311242 gatgagttgcaaaatttcaactcattaagtttcttagtgcatgtttctgtgatgaacatcggtgatttaattagatggaagtcatgttgtgatgttgttg 28311143  T
Q  119 tctaaatggcctaaagttacacatcttctccggaaatccaaattgttgagttcagttgtctgcatactattttcaacaaatctattgaaataaacatttt 218  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  28311142 tctaaatggcctaaagttacacatgttctccggaaatccagattgttgagttcagttgtctgcatactatttccaacaaatttattgaaacaaacatttt 28311043  T
Q  219 ggttgatccttgtgaacacttcaac 243  Q
    |||||||||||||||||||||||||    
T  28311042 ggttgatccttgtgaacacttcaac 28311018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 28306451 - 28306231
Alignment:
Q  19 gatgagttacaaaatttcaactcattaagtttctaagtgcatgtctctgtgatgaacattggtgatttaattagatggaagtcatgttgtgatgttgttg 118  Q
    |||||||| ||||||| |||| ||||||||||||  |||| | | | |||||| |||||||||||||||    ||||||||||||||||||||||||||     
T  28306451 gatgagttgcaaaattacaacacattaagtttctcggtgcttatttatgtgattaacattggtgattta----gatggaagtcatgttgtgatgttgttc 28306356  T
Q  119 tctaaatggcctaaagttacacatcttctccggaaatccaaattgttgagttcagttgtctgcatactattttcaacaaatctattgaaataaacatttt 218  Q
    ||||||||||||||||||| | || ||||||  |||  ||  |||||| |||||||  | ||||||||||||  |||||||||||||||| || ||||||    
T  28306355 tctaaatggcctaaagttataaatgttctccaaaaaatcagcttgttgggttcagtcatgtgcatactatttctaacaaatctattgaaacaagcatttt 28306256  T
Q  219 ggttgatccttgtgaacacttcaac 243  Q
     ||| ||||||||||||||||||||    
T  28306255 agtttatccttgtgaacacttcaac 28306231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 13197356 - 13197573
Alignment:
Q  19 gatgagttacaaaatttcaactcattaagtttctaagtgcatgtctctgtgatgaacattggtgatttaattagatggaagtcatgttgtgatgttgttg 118  Q
    |||||||| ||||||| ||||||||| || || | ||||||| | |||||||||||| |||| ||| |     |||||||||||||| |||||||||||     
T  13197356 gatgagttgcaaaattgcaactcattgagcttttcagtgcatatttctgtgatgaacgttggcgatatg----gatggaagtcatgtggtgatgttgttc 13197451  T
Q  119 tctaaatggcctaaagttacac-atcttctccggaaatccaaattgttgagttcagttgtctgcatactattttcaacaaatctattgaaataaacattt 217  Q
    |||||||||||||||  || || |  ||||||||||  |||  |||| |    |||| ||||||||||| |||  |||||||| ||||||| ||  ||||    
T  13197452 tctaaatggcctaaaaatatacaaggttctccggaatcccagcttgtcggacccagtcgtctgcatactgtttctaacaaatcaattgaaacaagtattt 13197551  T
Q  218 tggttgatccttgtgaacactt 239  Q
    |||  |||||||||||||||||    
T  13197552 tggcggatccttgtgaacactt 13197573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University