View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_123 (Length: 238)
Name: NF18243_high_123
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_123 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 41750022 - 41750236
Alignment:
| Q |
7 |
gagaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtat |
106 |
Q |
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| T |
41750022 |
gagaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatgatgaattagtaagtgtatagtatagtattagtgcatgtat |
41750121 |
T |
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| Q |
107 |
tgggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgatagcgtatacgttacactt |
206 |
Q |
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| T |
41750122 |
tgggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatgataacgtatacgttaaactt |
41750221 |
T |
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| Q |
207 |
aattaagagtgtagg |
221 |
Q |
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| T |
41750222 |
aattaagagtgtagg |
41750236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 41756775 - 41756908
Alignment:
| Q |
87 |
tatagtattagtgcatgtattgggtgatttcacatgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatgtcgtcaatg |
186 |
Q |
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| T |
41756775 |
tatagtattagtgcatgtattgggtgatt-cacacgcatgtagaatacgtataaatactactctaaaatgatcatgtcgtatcaccgtatatcgttaatg |
41756873 |
T |
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| Q |
187 |
atagcgtatacgttacacttaattaagagtgtagg |
221 |
Q |
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| T |
41756874 |
ataacgtatacgttacagttaattaagtgtgtagg |
41756908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 41740139 - 41740198
Alignment:
| Q |
7 |
gagaagaagcaaagagagaagcctggtgattagaggagtttgtttcgtcattgatgaatg |
66 |
Q |
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| T |
41740139 |
gagaagaagcaaagagacaaacttggtgattcgtggagtttgcttcgccattgatgaatg |
41740198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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