View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_high_13 (Length: 556)
Name: NF18243_high_13
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 36926283 - 36926812
Alignment:
| Q |
11 |
gtgagaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36926283 |
gtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctctccatgc |
36926382 |
T |
|
| Q |
111 |
tgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36926383 |
tgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaat |
36926482 |
T |
|
| Q |
211 |
gaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36926483 |
gaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatg |
36926582 |
T |
|
| Q |
311 |
ctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagtttggcaataaacttgttga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36926583 |
ctagtgatgaggtctaccttggacagagagacactccagattggacttctgacataaaggcattggaggcttttgagaagtttggcaataagcttgttga |
36926682 |
T |
|
| Q |
411 |
aattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgccatacactttgcttaaacctactagtgaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36926683 |
aattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgtcatacactttgcttaaacctactagtgaa |
36926782 |
T |
|
| Q |
511 |
ggtggactaactggtatggggattcctaat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36926783 |
ggtggactaactggtatggggattcctaat |
36926812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 73 - 308
Target Start/End: Complemental strand, 49608461 - 49608226
Alignment:
| Q |
73 |
tgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagcc |
172 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| || || || || |||| | |
|
|
| T |
49608461 |
tgcactattattatatggattgcttcaactctccatgttgttgtcaactttggacattatccatatggaggctatccaccaagcagttctactctgagtc |
49608362 |
T |
|
| Q |
173 |
gacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgt |
272 |
Q |
| |
|
| ||||||||||||||||| | |||||||| |||||| ||||| |||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
49608361 |
ggtgactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacagtttcaagctgt |
49608262 |
T |
|
| Q |
273 |
tcttggtctttcacttgtggaaatattgtctaggca |
308 |
Q |
| |
|
||||| |||||||| || |||| |||||| |||| |
|
|
| T |
49608261 |
tcttgacatttcacttttgaaaatcttgtctgggca |
49608226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 49608184 - 49608103
Alignment:
| Q |
372 |
attggaggctttt-gagaagtttggcaataaacttgttgaaattgagaaaaggattgggataatgaacaatgatgagaaact |
452 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
49608184 |
attggaggctttttgagaagtttgacaataaacttgcagaaattgagaaaaggattgtgataatgaacaatgatgaaaaact |
49608103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 49608494 - 49608458
Alignment:
| Q |
11 |
gtgagaagaaagatgagccttggtggccaaagatgca |
47 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49608494 |
gtgacaagaaagatgagccttggtggccaaagatgca |
49608458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 386538 - 386672
Alignment:
| Q |
175 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttc |
274 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||| |||||||||| |||| |||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
386538 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttc |
386637 |
T |
|
| Q |
275 |
ttggtctttcacttgtggaaatattgtctaggcat |
309 |
Q |
| |
|
|||| |||||| ||||| |||| |||||||||||| |
|
|
| T |
386638 |
ttggcctttcaattgtgaaaatcttgtctaggcat |
386672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 42692010 - 42691910
Alignment:
| Q |
292 |
gaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagt |
391 |
Q |
| |
|
||||||||||| ||||| ||| |||||| || ||||||||| ||||||||| |||| | ||||| || || | || |||||| ||||| ||| |||||| |
|
|
| T |
42692010 |
gaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagacaatccaaactggacatcagatacaagggcattagaggcctttaagaagt |
42691911 |
T |
|
| Q |
392 |
t |
392 |
Q |
| |
|
| |
|
|
| T |
42691910 |
t |
42691910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 42692230 - 42692170
Alignment:
| Q |
72 |
ttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtat |
132 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| ||||| || || || |||||||||||| |
|
|
| T |
42692230 |
ttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtat |
42692170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 46709303 - 46708976
Alignment:
| Q |
16 |
aagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcag |
115 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| || | |||| ||| ||||| ||||| || ||||||||||||||||||||||| ||||| || | |
|
|
| T |
46709303 |
aagaaaaacgagccttggtggccaaagatgcaaacagtggaagagttgacggaaacatgcacaatcattatatggattgcttcagctctacatgcagctg |
46709204 |
T |
|
| Q |
116 |
tcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaact |
215 |
Q |
| |
|
| ||||||||||| ||||| | || ||| || |||| | ||||| | || || || ||| |||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
46709203 |
taaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcctgagaaaggaactatagagtatgatgaact |
46709104 |
T |
|
| Q |
216 |
tttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatgctagt |
315 |
Q |
| |
|
| || ||||||||| ||||||||| ||||||||||||| |||| || || || || |||| |||| ||| | ||||| ||||||| ||| || | |
|
|
| T |
46709103 |
tgtgacaaatcctgataaagcttttttgaaaacaatcacggcacaattgcagactcttgttggcatttcgcttatagaaattttgtctacacattcttct |
46709004 |
T |
|
| Q |
316 |
gatgaggtctaccttggacagagagaca |
343 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
46709003 |
gatgaggtctaccttggacaaagagaca |
46708976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 6262365 - 6262233
Alignment:
| Q |
11 |
gtgagaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgc |
110 |
Q |
| |
|
|||| |||||||| ||||| |||||||| || ||||| |||| | |||| ||||| || ||||| |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
6262365 |
gtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatatggactgcttcagctcttcatgc |
6262266 |
T |
|
| Q |
111 |
tgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
|| || || |||||||| ||||| |||||||| |
|
|
| T |
6262265 |
agctgttaattttggacaatatccgtatggagg |
6262233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 6456211 - 6456147
Alignment:
| Q |
79 |
attattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
6456211 |
attatcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggagg |
6456147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 6362174 - 6362116
Alignment:
| Q |
85 |
atatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
6362174 |
atatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggagg |
6362116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 6330864 - 6330783
Alignment:
| Q |
62 |
tgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| | ||||| || || || ||||| || |||||||||||||| |
|
|
| T |
6330864 |
tgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggagg |
6330783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 6351291 - 6351231
Alignment:
| Q |
83 |
ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
||||||||||||||||||| || ||||| || || || || ||||| |||||||||||||| |
|
|
| T |
6351291 |
ttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggagg |
6351231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 6423208 - 6423148
Alignment:
| Q |
83 |
ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg |
143 |
Q |
| |
|
||||||||||||||||||| || ||||| || || || |||||||| || ||||||||||| |
|
|
| T |
6423208 |
ttatatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggagg |
6423148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University