View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_131 (Length: 221)
Name: NF18243_high_131
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_131 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 34055676 - 34055484
Alignment:
| Q |
12 |
agtgagaagaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaactctaggatgaatac |
111 |
Q |
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| T |
34055676 |
agtgcgaagaacgaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaataggagccacaacactaggatgaatac |
34055577 |
T |
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| Q |
112 |
aggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgt |
204 |
Q |
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| T |
34055576 |
aggaagcacattgaaaaagatccacctttggagaggagattccagccagtgaaagtgccaaagccaactgtgaatatgaatgaatcaaaatgt |
34055484 |
T |
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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 47381252 - 47381351
Alignment:
| Q |
84 |
ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtg |
183 |
Q |
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| T |
47381252 |
ataggagccacaacactag-atgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgccagagccaactgtg |
47381350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 47816721 - 47816816
Alignment:
| Q |
88 |
gagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgtga |
184 |
Q |
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| T |
47816721 |
gagccacaacactag-atgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgctagagccaactgtga |
47816816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 45113354 - 45113434
Alignment:
| Q |
102 |
ggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt |
182 |
Q |
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| T |
45113354 |
ggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaaccaactgt |
45113434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 47381173 - 47381229
Alignment:
| Q |
30 |
atatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata |
86 |
Q |
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| T |
47381173 |
atatatatggttgtgcatatgctgaatttgccacaactttcatctcttaagtaaata |
47381229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 47816634 - 47816694
Alignment:
| Q |
24 |
gaagacatatatatggttttgcatatgctgaacttgccacaaattccatctcttaagtaaata |
86 |
Q |
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| T |
47816634 |
gaagacatatatatggctgt--atatgctcagcttgccacaacttccatctcttaagtaaata |
47816694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 40243962 - 40244059
Alignment:
| Q |
84 |
ataggagccacaactctaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagttaaagtgccaaagccaactgt |
182 |
Q |
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| T |
40243962 |
ataggagccacaactctag-atgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagtgccagagccaactgt |
40244059 |
T |
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