View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_high_138 (Length: 207)
Name: NF18243_high_138
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_138 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 799146 - 798981
Alignment:
| Q |
21 |
caagcacatgcgctagaagttagggcggatcatatgagacatctggtgaaaagcctgattcacttggcgagctgagctaggtgaatgggagccaaaacgg |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
799146 |
caagcacatgcgctagaagttagggcagatcatatgagacatctggtgaaaagcttgattcgcttggcgagctgagctaggtgaa-----gccaaaacgg |
799052 |
T |
|
| Q |
121 |
agttcttgaaggaaaagccaaagtcggtttgctaggcgagatttggtcctctaggtgaactaaggtggttc |
191 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
799051 |
agtcctcgaaggaaaagccaaagtcggtttgctaggcgagatttggtcctctaggtgaactaaggtggttc |
798981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 25034697 - 25034767
Alignment:
| Q |
120 |
gagttcttgaaggaaaagccaaagtcggtttgctaggcgagatttggtcctctaggtgaactaaggtggtt |
190 |
Q |
| |
|
||||||| |||||||||||||||| |||||| || ||||||| ||||| ||| | |||||||||||||| |
|
|
| T |
25034697 |
gagttctagaaggaaaagccaaaggtggtttgataagcgagatgtggtctgctaagcgaactaaggtggtt |
25034767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University