View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_high_18 (Length: 512)
Name: NF18243_high_18
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 46300359 - 46299837
Alignment:
| Q |
11 |
gagcacagacaacaaagtcaaaagtaattcgaactgaacaacgtacatggcatgcaaagacaaagatgttttaattt-------------gtgtgtgatc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46300359 |
gagcacagacaacaaagtcaaaagtaattcgaactgaacaacgtacatggcatgcaaagacaaagatgttttaatttcaagttacatattgtgtgtgatc |
46300260 |
T |
|
| Q |
98 |
atcattcacatttgtcatgttttcctgttttttctcctcatcaccgctattattaatgtcgccattggaactctttctctcaaaccctgatcttgattct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46300259 |
atcattcacatttgtcatgttttcctgttttttctcctcatcaccgctattattaatgtcgccattggaactctttctctcaaaccatgatcttgattct |
46300160 |
T |
|
| Q |
198 |
agacacactcaagcgtacgcaagttaaaattcaataactattcattaatgatgaatcaaagaaattcatgtagtatagtccaaaaagagaagctagctac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46300159 |
agacacactcaagcgtacgcaagttaaaattcaataactattcattaatgatgaatcaaagaaattcatgtagtatagtccaaaaagagaagctagctac |
46300060 |
T |
|
| Q |
298 |
accgttttcttttggtctcataattgagtcatgcatcacat--------acacatagttatttcaattttaattaattattcttcctataaatgcgttgc |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46300059 |
accgttttcttttggtctcataattgagtcatgcatcacatacactgatacacatagttatttcaattttaattaattattcttcctataaatgcgttgc |
46299960 |
T |
|
| Q |
390 |
gttgggtcactgttcaattcttttttcaaagaaaatatcttcacttattatttaacgtttcaatgattaatcccgtttgtgtctggtatttagttaggtg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46299959 |
gttgggtcactgttcaattcttttttcaaagaaaatatcttcacttattatttaacgtttcaatgattaatcccgtttgtgtctggtatttagttaggtg |
46299860 |
T |
|
| Q |
490 |
tgaaatgaaaagtgataaagtaa |
512 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46299859 |
tgaaatgaaaagtgataaagtaa |
46299837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University