View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_22 (Length: 488)
Name: NF18243_high_22
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 45392180 - 45391728
Alignment:
| Q |
16 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatgg |
115 |
Q |
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| T |
45392180 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagtttatgttttgattatcatggcatagcatatgg |
45392081 |
T |
|
| Q |
116 |
tatgtttgatttgtaaaag-taagtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacct |
214 |
Q |
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| T |
45392080 |
tatgtttgatttgtaaaaggtaagtgtttgattcgtgtatttgagttactcacatggtcagaattaaatattgatatgacttaaaaccttgaagagacct |
45391981 |
T |
|
| Q |
215 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaaccattttgctctttcttatcttctcaatatgattcataacattgccaccattct |
314 |
Q |
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| T |
45391980 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaatcattttgctctttcttatcttctcaatatgattcataacattgccaccattct |
45391881 |
T |
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| Q |
315 |
atcggcaatgattcaatggtagtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatt |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391880 |
atcgacaatgattcaatggtagtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatt |
45391781 |
T |
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| Q |
415 |
tcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggac |
467 |
Q |
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| T |
45391780 |
tcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggac |
45391728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 45377553 - 45377348
Alignment:
| Q |
38 |
atagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatggtatgtttgatttgtaaaag-ta |
136 |
Q |
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|||||||| |||||| |||||| ||||||||| | || || |||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||| || |
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| T |
45377553 |
atagaattaactgctcatccaagtatgttctactatttatggaagttgatggtctgattatcacggcatagcttatggtatgtttgatttgcaaaagata |
45377454 |
T |
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| Q |
137 |
agtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacctaacccaaatgactagtcaatta |
236 |
Q |
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| T |
45377453 |
agtgtttgattcatgtatctgagtcagttactcggtcaaatctaaatattactatgactcaagaccttgaaaagacctaaaccaaatgtctagtcaatta |
45377354 |
T |
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| Q |
237 |
agtggt |
242 |
Q |
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||||| |
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| T |
45377353 |
ggtggt |
45377348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 45377040 - 45376913
Alignment:
| Q |
336 |
gtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatttcattaagcatgtaaactaac |
435 |
Q |
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||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
45377040 |
gtccttttcaatttggtgggttcacaaaatgaatagtgtttgtgatcaatgtaatagaaattaaggaatatatttaattttgttaagcatg----caaac |
45376945 |
T |
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| Q |
436 |
tatcgaagagagcttgtatgggatgttaggac |
467 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
45376944 |
tatcgaaaagagcttgtatgggatgttaggac |
45376913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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