View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_26 (Length: 473)
Name: NF18243_high_26
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 2 - 463
Target Start/End: Complemental strand, 2442723 - 2442262
Alignment:
| Q |
2 |
aaaatggggttcttatcttaaacgtgagaagaagctcgattcactggttggtcgccgtccaactgctcctccagctcccaaaggactttacatatatggc |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442723 |
aaaatgggtttcttatcttaaacgtgagaagaagctcgattcactggttggtcgccgtccaactgctcctccagctcccaaaggactttacatatatggc |
2442624 |
T |
|
| Q |
102 |
aatgtgggcagtggtacttaccttcttttatttgtcttttgggtaaattatcttttccattccatcctcatgatgattaaatttacattgtcctttcctc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442623 |
aatgtgggcagtggtacttaccttcttttatttgtcttttgggtaaattatcttttccattccatcctcatgatgattaaatttacattgtcctttcctc |
2442524 |
T |
|
| Q |
202 |
tgattttaaaaatcacactcccctctcttagaagatgaatgagttactatttattccattattacgtaaacatgttttttagggannnnnnnncctgtat |
301 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2442523 |
tgattttgaaaatcacactcccctctcttagaagatgaatgagttactatttattccattattacgtaaacatgttttttagggattttttttcctgtat |
2442424 |
T |
|
| Q |
302 |
gctagtatcaacattactgatatctaattttgaacctctattgtcaactgagacttaagaaaatgaaacgaagggttgggtgaagtttcaaagttaatag |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442423 |
gctagtatcaacattactgatatctaattttgaacctctattgtcaactgagacttaagaaaatgaaacgaagggttgggtgaagtttcaaagttaatag |
2442324 |
T |
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| Q |
402 |
gaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgtta |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442323 |
gaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgtta |
2442262 |
T |
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