View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_high_32 (Length: 449)

Name: NF18243_high_32
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_high_32
NF18243_high_32
[»] chr3 (6 HSPs)
chr3 (9-433)||(43602976-43603417)
chr3 (9-302)||(43609531-43609826)
chr3 (9-136)||(43616244-43616371)
chr3 (221-302)||(43614842-43614923)
chr3 (385-433)||(43609411-43609459)
chr3 (385-433)||(43614722-43614770)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 43603417 - 43602976
Alignment:
Q  9 agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43603417 agcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa 43603318  T
Q  109 gtaattctgaaaagcaaccaagaaggattacagaaaaaattagtcctaagattc--tgtcaaaatagcatttgtttagaaatcacatagagattaaagaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  43603317 gtaattctgaaaagcaaccaagaaggattacagaaaaaattagtcctaagattctttgtcaaaatagcatttgtttagaaatcacatagagattaaagaa 43603218  T
Q  207 taatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccat----- 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  43603217 taatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccatatata 43603118  T
Q  302 ---------aaataatgttagcaaattatatatgcacactattgaatgaaaaaaattcaagt-nnnnnnnnncagatcatattttcaacaatgttaccgt 391  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||    
T  43603117 taatagaaaaaataatgttagcaaattatatatgcacactattgaatgaaaaaaattcaagtaaaaaaaaaacagatcatattttcaacattgttaccgt 43603018  T
Q  392 tcaaatatcaaagccaaagggaccataatcatggctccaatc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43603017 tcaaatatcaaagccaaagggaccataatcatggctccaatc 43602976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 43609826 - 43609531
Alignment:
Q  9 agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa 108  Q
    |||| ||||||||||  |||| ||||| ||||||||||| ||| ||| || |  ||||||||| |||  ||| |||| ||||||||||||||||| ||||    
T  43609826 agcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagagcaacaccatgcacattcagagttaaa 43609727  T
Q  109 gtaattctgaaaa-gcaaccaagaaggattacagaaaaaattagtcctaagattctgt--caaaatagca----tttgtttagaaatcacatagagatta 201  Q
    |||| |||||||| ||||||||| ||||||| |||   |||||||||||||||||| |  |||||||  |    || ||| | |||| |||  |||||||    
T  43609726 gtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataataaaatttggttgaaaaataaca--gagatta 43609629  T
Q  202 aagaataatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccat 301  Q
    | |||||||   |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||    
T  43609628 aggaataat---aatgtactaccccaataatgaaagcataaaaatcttgaagatggtcataaatgagaatgttactggcacggcttgtttcctggaccat 43609532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43616371 - 43616244
Alignment:
Q  9 agcagagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaa 108  Q
    |||| ||||||||||  |||| ||||| || |||||||| ||||||||||||  |||||| |||||| |||| |||||||||| |||||||| || ||||    
T  43616371 agcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaa 43616272  T
Q  109 gtaattctgaaaagcaaccaagaaggat 136  Q
    ||||||||||||| |||| ||| |||||    
T  43616271 gtaattctgaaaaacaacaaagtaggat 43616244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 43614923 - 43614842
Alignment:
Q  221 tacccaaatagtgaaagcataaaaatcttgaagatggtcttaaatgagaatttcactggcacggcttgtttgctggaccata 302  Q
    ||||| |||| |||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||||| ||||||||||    
T  43614923 taccccaataatgaaagcataaaaatcttgaagatggttataaatgagaatattgctggcacggcttgtttcctggaccata 43614842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 43609459 - 43609411
Alignment:
Q  385 ttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatc 433  Q
    ||||| ||||||||| ||||| ||||||||||| || ||||||||||||    
T  43609459 ttacctttcaaatattaaagctaaagggaccatgataatggctccaatc 43609411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 43614770 - 43614722
Alignment:
Q  385 ttaccgttcaaatatcaaagccaaagggaccataatcatggctccaatc 433  Q
    |||||||||||||||||||   ||||||||||| || ||||||||||||    
T  43614770 ttaccgttcaaatatcaaaaataaagggaccatgataatggctccaatc 43614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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