View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_39 (Length: 429)
Name: NF18243_high_39
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 280 - 416
Target Start/End: Complemental strand, 12545612 - 12545476
Alignment:
| Q |
280 |
caatgtgtagagaatcaccctactattgaagccaaagactaacatacataggtttactgctagattgctttctaacataccatgtattttaattagtcaa |
379 |
Q |
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| T |
12545612 |
caatgtgtagagagtcatcctactattgaagccgaagactaacatacataggtttactgctagattgctttctaacataccatgtattttaattagtcaa |
12545513 |
T |
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| Q |
380 |
ggaaatatttcctttgacaaagggtatacctttattt |
416 |
Q |
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| T |
12545512 |
ggaaatatttcctttgacaaagggtatacctttattt |
12545476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 12546456 - 12546408
Alignment:
| Q |
226 |
cattaattctgttgtagctgcttgaattgtggaaacatattggtcttgt |
274 |
Q |
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| T |
12546456 |
cattgattctgttgtagctgcttgaattgtggaaacatattggtcttgt |
12546408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 12537637 - 12537681
Alignment:
| Q |
174 |
tagatatcaagggctgaacaa-ttttatctaatgtgcattcattt |
217 |
Q |
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| T |
12537637 |
tagatatcaagggctgatcaatttttatccaatgtgcattcattt |
12537681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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