View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_40 (Length: 428)
Name: NF18243_high_40
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 51417972 - 51418373
Alignment:
| Q |
9 |
gattatacttcactactatagctacctatcaatattcttcaatatccaaaacagcaacatcaaatcaaaccaacattctctctctttctttgcccttgtc |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51417972 |
gattatacttcactactatagctacctaacaatattcttcaatatccaaaacagcaacatcaaatcaaaccaacattctctctctttctttgcccttgtc |
51418071 |
T |
|
| Q |
109 |
ctaactttttctttcctttaaattcataggagtataactcacaagtcttccctcacaaaactaacacagatcttaaccaataatcccattgcctttgtta |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51418072 |
ctaactttttctttcctttaaattcataggagta--actcacaagtcttccctcacaaaactaacacagatcttaaccaataatcccattgcctttgtta |
51418169 |
T |
|
| Q |
209 |
caattttgctgttctttctctcccataaattgctaatcattaatgaaactagacacagaaacagagtggtgtctccctaacaatgttacagacattacat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51418170 |
caattttgctgttctttctctcccataaattgctaatcattaatgaaactagacacagaaacagattggtgtctccctaacaatgttacagacattacat |
51418269 |
T |
|
| Q |
309 |
gcatggataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51418270 |
gcatggataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagt |
51418369 |
T |
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| Q |
409 |
tatg |
412 |
Q |
| |
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|||| |
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| T |
51418370 |
tatg |
51418373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 250 - 400
Target Start/End: Original strand, 51413158 - 51413308
Alignment:
| Q |
250 |
aatgaaactagacacagaaacagagtggtgtctccctaacaatgttacagacattacatgcatggataaacaaccaacggtggtaattgagaaagtgagc |
349 |
Q |
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||||||||| | |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
51413158 |
aatgaaacttcatacagaaacagagtgctgtctccctaataatgtgacagacattacatgcatggataaccaaccaacggtggtgattgagaaattgagc |
51413257 |
T |
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| Q |
350 |
aaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagt |
400 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
51413258 |
aaaacggtgcgtttactaggtttcatgttacaaaacggtgtctctaagagt |
51413308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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