View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_44 (Length: 419)
Name: NF18243_high_44
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 34134539 - 34134673
Alignment:
| Q |
270 |
cgtcagaatttgaaattattctcttataagaaacaaatatcatagacttggttaggctaattaatgatcaaagcatctactaagctacacttagttcatt |
369 |
Q |
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| T |
34134539 |
cgtcagaatttgaaattattctcttataagaaacaaatatcatagacttggttaggctaattaatgatcaaagcatctactaagctacacttagttcatt |
34134638 |
T |
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| Q |
370 |
tttagtggctaattgttgatattaatcttcttaat |
404 |
Q |
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| T |
34134639 |
tttagtggctaattgttgatattaatcttcttaat |
34134673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 34134272 - 34134387
Alignment:
| Q |
2 |
ataggataagagaatggtgggatattcaaatacaatgtctgnnnnnnnnaccattagatcaaatcctttgaagttaattatttttgcattttaattatgt |
101 |
Q |
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| T |
34134272 |
ataggataagagaatggtgagatattcaaatacaatgtct-atctttttaccactagatcaaatcctttgaagttaattatttttgcattttaattatgt |
34134370 |
T |
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| Q |
102 |
gcaatatcactcatgta |
118 |
Q |
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| T |
34134371 |
gcaatatcactcatgta |
34134387 |
T |
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