View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_high_46 (Length: 410)
Name: NF18243_high_46
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 83 - 279
Target Start/End: Original strand, 32510785 - 32510981
Alignment:
| Q |
83 |
tcttcttcatcggctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaatcagaagttagaaccatgcttatcttaagaccatgtatt |
182 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32510785 |
tcttctccatcggctagaagtgaaaattattttagaatattccaagtttcttgtgagttaatcagaagttagaaccatgcttatcttaagaccatgtatt |
32510884 |
T |
|
| Q |
183 |
ctcacttaatgcataccataggttttggagcaaaacctattcatgtgaacaaaaagtgatttggccgagtgattcttggaattgtgatcacagtgct |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32510885 |
ctcacttaatgcataccataggttttggagcaaaacctattcatgtgaacaaaaagtgatttggccgagtgattcttggaattgtgatcacagtgct |
32510981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 32513744 - 32513880
Alignment:
| Q |
95 |
gctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaatcagaagttagaaccatgct---------------tatcttaagaccatgt |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||| ||| |
|
|
| T |
32513744 |
gctagaagtgaaaattattttagaatatttcaagtttcttgtgagttaa-cagaagtaagaaccgtgcttatctgctatatagatatcttaagaccctgt |
32513842 |
T |
|
| Q |
180 |
attctcacttaatgcataccataggttttggagcaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32513843 |
attctcacttaatgcataccataggttctggagcaaaa |
32513880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 32511044 - 32511101
Alignment:
| Q |
342 |
attagtgaattcaataatctaagaccactccctccctactgtatcttaattgcttcat |
399 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32511044 |
attagtgaattcaataatctgagaccactccctccctactgtatcttaactgcttcat |
32511101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 32510699 - 32510762
Alignment:
| Q |
18 |
aatggatggtactttcgataattacaaattttcgactatgatcaagcattacattatctgcacag |
82 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
32510699 |
aatggatggtactttcaataattacaaattttcgactgtgatcaagca-tacattatctgcacag |
32510762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 32513649 - 32513709
Alignment:
| Q |
22 |
gatggtactttcgataattacaaattttcgactatgatcaagcattacattatctgcacag |
82 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| | |||||| |||| ||||||||| |
|
|
| T |
32513649 |
gatggtgctttcaataattacaaattttcgactatgttaaagcatcgcattctctgcacag |
32513709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University