View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_high_48 (Length: 405)

Name: NF18243_high_48
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_high_48
NF18243_high_48
[»] chr1 (15 HSPs)
chr1 (79-396)||(8106166-8106478)
chr1 (19-80)||(8106509-8106570)
chr1 (129-187)||(8116552-8116610)
chr1 (278-346)||(33202898-33202967)
chr1 (283-346)||(19637768-19637832)
chr1 (283-346)||(7988446-7988510)
chr1 (286-349)||(10536527-10536591)
chr1 (276-346)||(29415741-29415811)
chr1 (284-338)||(42325561-42325616)
chr1 (290-340)||(18490457-18490507)
chr1 (284-340)||(6427351-6427408)
chr1 (283-340)||(44296496-44296553)
chr1 (283-358)||(11412751-11412827)
chr1 (291-346)||(13436466-13436522)
chr1 (284-339)||(37318414-37318469)
[»] chr7 (10 HSPs)
chr7 (275-333)||(38134414-38134473)
chr7 (275-346)||(4909143-4909215)
chr7 (283-340)||(2525845-2525903)
chr7 (294-347)||(10893863-10893917)
chr7 (284-333)||(12278836-12278886)
chr7 (290-339)||(36314629-36314679)
chr7 (289-341)||(21247736-21247789)
chr7 (282-337)||(8160415-8160471)
chr7 (285-340)||(31808510-31808566)
chr7 (274-306)||(31924417-31924449)
[»] scaffold0022 (1 HSPs)
scaffold0022 (275-340)||(99885-99951)
[»] chr5 (6 HSPs)
chr5 (283-340)||(28296328-28296386)
chr5 (275-339)||(38749565-38749630)
chr5 (274-316)||(36611450-36611492)
chr5 (283-331)||(2577190-2577239)
chr5 (283-339)||(15410450-15410507)
chr5 (282-334)||(19293430-19293483)
[»] chr3 (4 HSPs)
chr3 (289-346)||(20691325-20691383)
chr3 (288-345)||(40150567-40150625)
chr3 (275-339)||(13799496-13799561)
chr3 (275-339)||(21478675-21478740)
[»] chr4 (9 HSPs)
chr4 (283-333)||(18513249-18513300)
chr4 (290-340)||(17734979-17735029)
chr4 (275-333)||(5654599-5654658)
chr4 (283-333)||(14465302-14465353)
chr4 (283-345)||(56049877-56049939)
chr4 (275-340)||(40783949-40784015)
chr4 (283-335)||(20743284-20743337)
chr4 (291-347)||(33950144-33950201)
chr4 (282-346)||(44362665-44362730)
[»] chr2 (9 HSPs)
chr2 (286-340)||(31026698-31026753)
chr2 (284-333)||(18570973-18571023)
chr2 (282-333)||(4229416-4229468)
chr2 (283-333)||(10535767-10535818)
chr2 (284-318)||(16630796-16630830)
chr2 (283-347)||(30298443-30298506)
chr2 (295-340)||(24980537-24980582)
chr2 (283-333)||(37402092-37402144)
chr2 (281-340)||(45000847-45000906)
[»] chr8 (6 HSPs)
chr8 (284-341)||(33382019-33382077)
chr8 (289-338)||(3508058-3508108)
chr8 (282-339)||(11803258-11803316)
chr8 (283-335)||(9936814-9936867)
chr8 (275-339)||(12570736-12570801)
chr8 (283-346)||(12985392-12985456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (275-341)||(240021-240088)
[»] chr6 (6 HSPs)
chr6 (282-340)||(32511667-32511726)
chr6 (280-340)||(14721238-14721299)
chr6 (283-343)||(18612621-18612682)
chr6 (283-346)||(9658879-9658943)
chr6 (283-346)||(32728367-32728431)
chr6 (282-333)||(34446564-34446616)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 79 - 396
Target Start/End: Complemental strand, 8106478 - 8106166
Alignment:
Q  79 tcaattaattgaaagagaattacaaggcagaaaaaatgaatgaccttacaacagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8106478 tcaattaattgaaagagaattacaaggcagaaaaattgaatgaccttacagcagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaa 8106379  T
Q  179 ttaata---gataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaagttagagagtactaaatacagagacatggactatg 275  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8106378 ttaataatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaaattagagagtactaaatacagagacatggactatg 8106279  T
Q  276 acatgttgacaccgataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtcagacaccgaaatgtgtccaataccggaacacgtct 375  Q
    ||||||||| ||||||||||||||||||||||||||||||        | | ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8106278 acatgttgataccgataataatttaagaaaaagacataat--------ttacatgtgttggtgtcagacaccgaaatgtgtccaataacggaacacgtct 8106187  T
Q  376 actacaataaagaccctatgc 396  Q
    |||||||||||||||||||||    
T  8106186 actacaataaagaccctatgc 8106166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 8106570 - 8106509
Alignment:
Q  19 gttctaactttgactcttcaaaatacatgaattgtaaactttgtaagtatcattgaagactc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8106570 gttctaactttgactcttcaaaatacatgaattgtaaactttgtaagtatcattgaagactc 8106509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 8116610 - 8116552
Alignment:
Q  129 acagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaattaatagat 187  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||||||    
T  8116610 acagaattgggaacatgtaacagtaaaaacagaaaatgataactaacgaattaatagat 8116552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 33202898 - 33202967
Alignment:
Q  278 atgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 346  Q
    |||||||||||||||||||||| | |||| ||||||| || |||||||||||||| ||||||||||||||    
T  33202898 atgttgacaccgataataattttaaaaaatgacataaatcaatgtaatcatatgttttggtgtcagacac 33202967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 19637768 - 19637832
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 346  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||| |||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 7988510 - 7988446
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 346  Q
    ||||| |||||||||||||||||  |||||||||| ||||||||||| ||||||||||| |||||    
T  7988510 gacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggacac 7988446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 10536591 - 10536527
Alignment:
Q  286 accgataataatttaagaaaaagacataattcat-gtaatcatatgtgttggtgtcagacaccga 349  Q
    ||||||||||||||||||| || ||||| ||||  | |||||||||||| |||||||||||||||    
T  10536591 accgataataatttaagaacaaaacatagttcaacgcaatcatatgtgtcggtgtcagacaccga 10536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 29415741 - 29415811
Alignment:
Q  276 acatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    ||||||||| || |||||||||||||||||| |||||||||||   |||||| ||||||| |||||||||||    
T  29415741 acatgttgaaactgataataatttaagaaaatgacataattcagcataatcacatgtgtt-gtgtcagacac 29415811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 42325561 - 42325616
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtg 338  Q
    |||||||||||||||| |||||| ||||||||||| |||||  |||||||||||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaacaatatgtgttggtg 42325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 18490457 - 18490507
Alignment:
Q  290 ataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 340  Q
    |||| ||||| | |||| |||||||||||||||||||||||| ||||||||    
T  18490457 ataacaattttaaaaaatgacataattcatgtaatcatatgtcttggtgtc 18490507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 6427351 - 6427408
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 340  Q
    |||||| ||||||||| ||||||  |||||||||| |||||| |||||||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtc 6427408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 44296553 - 44296496
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 340  Q
    ||||||| ||||||||| |||||| ||||||||| |  ||||||||||||| ||||||    
T  44296553 gacaccggtaataatttgagaaaatgacataatttagttaatcatatgtgtcggtgtc 44296496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 11412827 - 11412751
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacaccgaaatgtgtcc 358  Q
    ||||||||||||||| | |||||| |||||||||| |||| |||||| |||| |||||  |||||| | ||||||||    
T  11412827 gacaccgataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtgttggacaccaacatgtgtcc 11412751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 13436466 - 13436522
Alignment:
Q  291 taataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    |||||||||||| |||  |||||||||| |||||| ||||||||||||||| |||||    
T  13436466 taataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacac 13436522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 37318414 - 37318469
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    |||| ||||||||||||| |||| ||| ||||||| |||||||||||||||||||||    
T  37318414 acactgataataatttaa-aaaaggacgtaattcaatgtaatcatatgtgttggtgt 37318469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 38134473 - 38134414
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 333  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  38134473 gacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 4909143 - 4909215
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    |||| ||||||||| |||||||||| ||||||  |||||||||| |||||||||||||||  ||||| |||||    
T  4909143 gacaggttgacaccaataataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcggacac 4909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 2525903 - 2525845
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 340  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||||||||| ||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtc 2525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 10893917 - 10893863
Alignment:
Q  294 taatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 347  Q
    ||||||||||||| ||||||||| | |||||||| ||||||||||||| ||||||    
T  10893917 taatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtctgacacc 10893863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 12278836 - 12278886
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 333  Q
    |||| |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaattatatgtgt 12278886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 36314679 - 36314629
Alignment:
Q  290 ataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    |||||||||| |||||| |||||| |||| |||||||||||||||||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgt 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 21247789 - 21247736
Alignment:
Q  289 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 341  Q
    ||||||||||| |||||| ||| ||||||| ||||||||| |||||||||||||    
T  21247789 gataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgtca 21247736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 8160415 - 8160471
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggt 337  Q
    |||||||| ||||||||||||||||  |||||||| | |||||| ||||||||||||    
T  8160415 tgacaccgctaataatttaagaaaattacataatttagtgtaattatatgtgttggt 8160471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 31808566 - 31808510
Alignment:
Q  285 caccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 340  Q
    ||||||||||||||| |||||| |||| || ||| |||||||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtc 31808510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 31924417 - 31924449
Alignment:
Q  274 tgacatgttgacaccgataataatttaagaaaa 306  Q
    ||||| |||||||||||||||||||||||||||    
T  31924417 tgacacgttgacaccgataataatttaagaaaa 31924449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 99885 - 99951
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 340  Q
    ||||||| ||||||||||||||||| ||||||  ||||||||| ||||||| |||||||||||||||    
T  99885 gacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtc 99951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 28296328 - 28296386
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 340  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtc 28296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 38749630 - 38749565
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgt 339  Q
    ||||||| ||||||||||||||||| | |||| |||||||||| ||||||| ||||||||||||||    
T  38749630 gacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 36611450 - 36611492
Alignment:
Q  274 tgacatgttgacaccgataataatttaagaaaaagacataatt 316  Q
    ||||||||||||||||||| || |||||||||| |||||||||    
T  36611450 tgacatgttgacaccgatagtagtttaagaaaatgacataatt 36611492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 2577239 - 2577190
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgt 331  Q
    ||||||||||||||||| |||||| ||||||||| | |||||||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatcatatgt 2577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 15410507 - 15410450
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    ||||||| ||||||||||||||||  | || ||||| |||||||||||||||||||||    
T  15410507 gacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgt 15410450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 19293483 - 19293430
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgtt 334  Q
    ||||||| |||||||||||||||||  |||||||| | ||||||||||||||||    
T  19293483 tgacaccaataataatttaagaaaataacataattaagtgtaatcatatgtgtt 19293430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 20691325 - 20691383
Alignment:
Q  289 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 40150625 - 40150567
Alignment:
Q  288 cgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagaca 345  Q
    |||||||||||| |||||| || |||||||| ||||||||||||||| |||||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtctgaca 40150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 13799496 - 13799561
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    |||| |||||||||||||||| ||| |||||| ||||||||| | |||||| |||||||| |||||    
T  13799496 gacacgttgacaccgataatagtttgagaaaatgacataattaagtgtaataatatgtgtcggtgt 13799561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 21478675 - 21478740
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    ||||||| |||||| |||||||||| | || | ||||||| ||| |||||||||||||||||||||    
T  21478675 gacatgtcgacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgt 21478740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 18513300 - 18513249
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 333  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 17734979 - 17735029
Alignment:
Q  290 ataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 340  Q
    |||| ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  17734979 ataacaatttaaaaaaatgacataattcatgtaatcatatgtgtcggtgtc 17735029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 5654658 - 5654599
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 333  Q
    ||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 14465353 - 14465302
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 333  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgt 14465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 56049877 - 56049939
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagaca 345  Q
    ||||||||||||||||| |||||  |||||| |||| ||||||||||||||| |||||||||||    
T  56049877 gacaccgataataatttgagaaat-gacatagttcaatgtaatcatatgtgtcggtgtcagaca 56049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 40783949 - 40784015
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattcat-gtaatcatatgtgttggtgtc 340  Q
    ||||||| ||| ||||||||||||| ||| ||  ||||||||||  |||||||||||||||||||||    
T  40783949 gacatgtcgacgccgataataatttgagataataacataattcagcgtaatcatatgtgttggtgtc 40784015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 20743337 - 20743284
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttg 335  Q
    ||||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 33950144 - 33950201
Alignment:
Q  291 taataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 347  Q
    ||||||||| ||||||  |||||||| | ||||||||||||||| |||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 44362665 - 44362730
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    |||||||||||| | ||| |||||| ||||||||| | |||||||| | |||||||||||||||||    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 44362730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 31026698 - 31026753
Alignment:
Q  286 accgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 340  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||    
T  31026698 accgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtc 31026753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 18570973 - 18571023
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 333  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 4229468 - 4229416
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 333  Q
    ||||||| |||||||||||||| || ||||||||||| |||||||||||||||    
T  4229468 tgacaccaataataatttaagagaatgacataattcagtgtaatcatatgtgt 4229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 10535818 - 10535767
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 333  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||| ||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 16630796 - 16630830
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca 318  Q
    ||||||||||||||||||||||| |||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattca 16630830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 30298506 - 30298443
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 347  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||  |||||| |||||| ||||||    
T  30298506 gacaccgataataatttaataaaatgacataattcagtgtaatc--atgtgtcggtgtcggacacc 30298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 24980537 - 24980582
Alignment:
Q  295 aatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 340  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||    
T  24980537 aatttaagaaaatgttataattcatgtaatcataggtgttggtgtc 24980582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 37402144 - 37402092
Alignment:
Q  283 gacaccgataataatttaagaaaaa-gacataattca-tgtaatcatatgtgt 333  Q
    ||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||    
T  37402144 gacaccgattataatttaaaaaaaatgacataattcaatgtaatcatatgtgt 37402092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 45000906 - 45000847
Alignment:
Q  281 ttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 340  Q
    ||||||||||||| ||||| |||||| |||| |||||| ||||||||||||||| ||||||    
T  45000906 ttgacaccgataa-aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgtc 45000847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 33382077 - 33382019
Alignment:
Q  284 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 341  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||||||| |||||||    
T  33382077 acaccgataataatttaagaaaatgacataattcagagtaattatatgtgtcggtgtca 33382019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 3508058 - 3508108
Alignment:
Q  289 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtg 338  Q
    ||||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 11803258 - 11803316
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    |||||| | ||||||||||||||||  |||||||||| |||||| ||||||||||||||    
T  11803258 tgacactgttaataatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 9936814 - 9936867
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttg 335  Q
    |||| ||||||||||||||||||| || ||||||| || |||||||||||||||    
T  9936814 gacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 12570801 - 12570736
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 339  Q
    |||| |||||||||| |||||||||||||||||  ||||||| | |||||| |||| |||||||||    
T  12570801 gacacgttgacaccgctaataatttaagaaaaacgcataattaagtgtaattatatatgttggtgt 12570736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 12985392 - 12985456
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    |||||| |||||||||| ||||||  |||||||||| ||||||||||| ||| |||||| |||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacac 12985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 240088 - 240021
Alignment:
Q  275 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 341  Q
    |||||||||||| | |||||||||| ||||||  | |||||||| ||||||||||||||| |||||||    
T  240088 gacatgttgacaactataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtca 240021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 32511726 - 32511667
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 340  Q
    |||||||| ||||||||||||||||  |||||||||| |||||| ||| |||||||||||    
T  32511726 tgacaccgctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtc 32511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 14721238 - 14721299
Alignment:
Q  280 gttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 340  Q
    |||||||||  ||||||||||||||||  |||||||||| | |||| |||||||||||||||    
T  14721238 gttgacaccattaataatttaagaaaattacataattcactataattatatgtgttggtgtc 14721299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 18612621 - 18612682
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcaga 343  Q
    |||| |||||||||||   ||||| | ||||||||| |||||||||||||||||||||||||    
T  18612621 gacatcgataataattcttgaaaatgtcataattcaatgtaatcatatgtgttggtgtcaga 18612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 9658879 - 9658943
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 346  Q
    ||||||| ||||||||||||||||  |||||||||| |||||| |||| ||| ||||| ||||||    
T  9658879 gacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacac 9658943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 32728367 - 32728431
Alignment:
Q  283 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 346  Q
    |||||||||||||| ||||||||| |||||||||| ||||||  | ||||||||  |||||||||    
T  32728367 gacaccgataataaattaagaaaatgacataattctatgtaaatacatgtgttgacgtcagacac 32728431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 34446564 - 34446616
Alignment:
Q  282 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 333  Q
    |||||| ||||||||||| |||||| ||||||||||| |||||||||| ||||    
T  34446564 tgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgt 34446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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