View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_high_50 (Length: 400)

Name: NF18243_high_50
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_high_50
NF18243_high_50
[»] chr4 (3 HSPs)
chr4 (18-389)||(48517372-48517738)
chr4 (195-389)||(48514675-48514869)
chr4 (198-379)||(12704786-12704970)
[»] chr5 (1 HSPs)
chr5 (200-389)||(37075295-37075483)
[»] chr8 (2 HSPs)
chr8 (198-389)||(33293489-33293682)
chr8 (193-266)||(19488912-19488986)
[»] chr2 (3 HSPs)
chr2 (157-253)||(32745075-32745172)
chr2 (198-272)||(14918363-14918438)
chr2 (315-352)||(14104586-14104623)
[»] chr1 (2 HSPs)
chr1 (197-269)||(6786502-6786575)
chr1 (315-352)||(24159861-24159898)
[»] chr7 (1 HSPs)
chr7 (315-346)||(6898424-6898455)
[»] chr3 (2 HSPs)
chr3 (315-352)||(48432404-48432441)
chr3 (315-352)||(48435890-48435927)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 48517372 - 48517738
Alignment:
Q  18 accataatcacataataattcatatgtacctttagagatta-tttcataaccaaaatttgaagttcattgaaataagtaccttcgtattagaaatggctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  48517372 accataatcacataataattcatatgtacctttagagattactttcataaccaaaatttgaagttcattgaaataagtaccttcatatcagaaatggctc 48517471  T
Q  117 gtttaaatccatccataagaacgacgatgtgctcgacttacatgacaacaaacatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaa 216  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48517472 gtttaaatcc----ataagaacgacgatgtgctcgacttacatgacaacaaatatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaa 48517567  T
Q  217 cacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaatatcgttagatacaaaattgggg 316  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||| ||||||||||||||||||    
T  48517568 cacttaaattgttgatgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacac--aaaaataatatcattagatacaaaattgggg 48517665  T
Q  317 ctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 389  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  48517666 ctgagtcgcggactaggtcgctctctttaagacgttctgcggctctgcctgaattgtgcaacagatctttctt 48517738  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 48514675 - 48514869
Alignment:
Q  195 aattgttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaat 294  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||    
T  48514675 aattgttggaccatttcttgaacacttaaattgttgttgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacacaaaaaaataat 48514774  T
Q  295 atcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 389  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  48514775 atcgttcgatacaaaattggggctgagtcgcagactaggtcgctctctttaagacgttccgcggctctgcctgaattgtacaatagatctttctt 48514869  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 379
Target Start/End: Complemental strand, 12704970 - 12704786
Alignment:
Q  198 tgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaa-tcaaattttaa--cacnnnnnnntaa 293  Q
    |||||||||||||||||||||| |||||| |||| || |  |||||||||||||||| || ||||||||| || ||||| || ||  |||        |     
T  12704970 tgttggaacatttcttgaacactttaaatagttgttgcatctgtcgaacacttgaaaacaattctgcaaaaaattcaaacttgaaagcacacaaaataat 12704871  T
Q  294 tatcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaaca 379  Q
    ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||  |||||||||||| ||| ||||||||    
T  12704870 tat-gttagatacaaaattcgggctgagtcgcggactaggtcgctctctttaagaccttttgcggctctgcctcaatggtgcaaca 12704786  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 200 - 389
Target Start/End: Original strand, 37075295 - 37075483
Alignment:
Q  200 ttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaattttaacacnnnnnnntaatatcgt 299  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||       |||  | ||    
T  37075295 ttggaacatttcttgaacacttaaattgttgctgcatatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaaaac-ataaaataactttgt 37075393  T
Q  300 tagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 389  Q
    ||||||||||||| |  ||||||    || ||  ||||||||||||| |||||| |||||||||||||||| |||||||| || ||||||    
T  37075394 tagatacaaaatttgaactgagttatagattatgtcgctctctttaagacgttctgcggctctgcctgaatggtgcaacatatatttctt 37075483  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 33293489 - 33293682
Alignment:
Q  198 tgttggaacatttcttgaacacttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaa-ttttaacac-nnnnnnntaata 295  Q
    ||||||||||||||||||||||||||| |||||||| | |  ||||||||||||||| ||||||||||| ||||||| | |||||||        ||||     
T  33293489 tgttggaacatttcttgaacacttaaaatgttgctgcatacatcgaacacttgaaattatttctgcaaaaaatcaaactcttaacacacaaaaaataatt 33293588  T
Q  296 tcgttagatacaaaattggggctgagtcgcggactagatcgctctctttaaaacgttccgcggctctgcctgaattgtgcaacagatctttctt 389  Q
    |||||| |||||||||| |||||||||||| |||||  || |||| ||||| | |||||| |||||||||||||| || ||||| |||||||||    
T  33293589 tcgttaaatacaaaatttgggctgagtcgcagactacgtcactctttttaatatgttccgtggctctgcctgaatagtacaacatatctttctt 33293682  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 19488986 - 19488912
Alignment:
Q  193 aaaattgttggaacatttcttgaacact-taaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaa 266  Q
    |||||||||| |||||||||||||||||  ||||||||| || |  ||||||||||||||||| |||| ||||||    
T  19488986 aaaattgttgaaacatttcttgaacactaaaaattgttgttgcatctgtcgaacacttgaaattatttatgcaaa 19488912  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 32745075 - 32745172
Alignment:
Q  157 catgacaacaaacatggcagatgctctaaacgtcttaaaattgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaa 253  Q
    |||||||| ||||||||||||| || | | ||||||||||||||||||||||||||||||||| |||||| | ||||| |  ||||||||||||||||    
T  32745075 catgacaataaacatggcagatactatgatcgtcttaaaattgttggaacatttcttgaacactttaaataggtgctgcatctgtcgaacacttgaaa 32745172  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 14918363 - 14918438
Alignment:
Q  198 tgttggaacatttcttgaacactt-aaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaatca 272  Q
    |||||||||||||||||||||||| |||||||||||| |  | ||||||||||| ||| ||||||||||| |||||    
T  14918363 tgttggaacatttcttgaacactttaaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatca 14918438  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 14104586 - 14104623
Alignment:
Q  315 ggctgagtcgcggactagatcgctctctttaaaacgtt 352  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  14104586 ggctgagtcgcggactaggtcgctctctttaagacgtt 14104623  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 6786575 - 6786502
Alignment:
Q  197 ttgttggaacatttcttgaacac-ttaaattgttgctgaacatgtcgaacacttgaaatcatttctgcaaagaa 269  Q
    ||||||||||||||||||||||| ||||||| ||| || |  |||| |||| |||||||||||| |||||||||    
T  6786575 ttgttggaacatttcttgaacactttaaatttttgttgcatctgtcaaacatttgaaatcatttatgcaaagaa 6786502  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 24159898 - 24159861
Alignment:
Q  315 ggctgagtcgcggactagatcgctctctttaaaacgtt 352  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  24159898 ggctgagtcgcggactaggtcgctctctttaagacgtt 24159861  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 6898455 - 6898424
Alignment:
Q  315 ggctgagtcgcggactagatcgctctctttaa 346  Q
    ||||||||||||||||||||||||||||||||    
T  6898455 ggctgagtcgcggactagatcgctctctttaa 6898424  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 48432404 - 48432441
Alignment:
Q  315 ggctgagtcgcggactagatcgctctctttaaaacgtt 352  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  48432404 ggctgagtcgcggactaggtcgctctctttaagacgtt 48432441  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 48435927 - 48435890
Alignment:
Q  315 ggctgagtcgcggactagatcgctctctttaaaacgtt 352  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  48435927 ggctgagtcgcggactaggtcgctctctttaagacgtt 48435890  T

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