View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_51 (Length: 400)
Name: NF18243_high_51
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 37088007 - 37087637
Alignment:
| Q |
12 |
cacagagcaaaataccaactgctaccaacattgtccctgctgaaattccatatccccaacctcttcctatattgtcttgaacataaaccaatacaaccac |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37088007 |
cacaaagcaaaataccaactgctaccaacattgtccctgctgaaattccatatccccaacctcttcctatattgtcttgaacataaaccaatacaacaac |
37087908 |
T |
|
| Q |
112 |
tgaaaataaggatccaatacttataaaaaagtagaatctattgaagaaaaatatcatattcttctcttcctttggatcatttgtgtcaaattgatcagat |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37087907 |
tgaaaacaaggatccaatacttataaaaaagtagaatctattgaagaaaaatatcatattcttctcttcctttggatcatttgtgtcaaattgatcagat |
37087808 |
T |
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| Q |
212 |
ccaaatcctgacacattggattttattcctccaccacctaaagctattgtataaagtgctgcaaagagaagtgataactgtttgccacttgcttgaatgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37087807 |
ccaaatcctgacacattggattttattcctccaccacctaaagctattgtataaagtgctgcaaagagaagtgataactgtttgccacttgcttgaatgc |
37087708 |
T |
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| Q |
312 |
attgatggtgttgtcttcttacttcactgcatggtggaggtgtcatgctaggaattgttgtagctaaagtt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37087707 |
attgatggtgttgtcttcttacttcactgcatggtggaggtgtcatgctaggaattgttgtagctaaagtt |
37087637 |
T |
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