View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_61 (Length: 377)
Name: NF18243_high_61
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 107 - 361
Target Start/End: Complemental strand, 25184307 - 25184053
Alignment:
| Q |
107 |
atatatagtttgcagtactttttcttccaactatacgctgaatttatatactcatatgtaaagaggatatatagttttaatgtagtactttttctttcaa |
206 |
Q |
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| T |
25184307 |
atatatagtttgcagtactttttcttccaactatacgctgaatttatatactcatatgtaaagaggatatatagttttaatgtagtattttttctttcaa |
25184208 |
T |
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| Q |
207 |
tcatacacttcatttaagtgtatatatagtttcataatagtccatgtttcttcaggtgtgaaatccgtaaataacaatgtgggaaacctaagacataagt |
306 |
Q |
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| T |
25184207 |
tcatacacttcatttaagtgtatatatagtttcatactagtccatgtttcttcaggtgtgaaatccgtaaataacaatgtgggaaacctaagacataagt |
25184108 |
T |
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| Q |
307 |
tgactaattcactgcttctggtcattaagatttctttggtacatctcttcatgac |
361 |
Q |
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| T |
25184107 |
tgactaattcactgcttctggtcattaagatttctttggtacatctcttcatgac |
25184053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25184466 - 25184406
Alignment:
| Q |
1 |
aaaatacacacgcttagggatgacgttaacatccaaattagtccacaacctattataatag |
61 |
Q |
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| T |
25184466 |
aaaatacacacgcttagggatgacgttaacatccaaattagtccacaacctattataatag |
25184406 |
T |
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