View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_high_62 (Length: 376)
Name: NF18243_high_62
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_62 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 15083451 - 15083091
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | | ||||| |||||| | |
|
|
| T |
15083451 |
tcatagtaaaggagatattaaagaagtgtgggggagcgcctcttgctgcaatagcactaggaagtctcttgcgctttaaaacagaggaaaaagagtggca |
15083352 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15083351 |
ctatgtgaaggaaagcaaactatggagtttacaagatgaagattatgccatgcctgcgttgagattaagttacttgaatttgccgcttaaactgagacaa |
15083252 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15083251 |
tgttttgccttctgtgcactatttcccaaagatgcaataataaggaagcagtttctaattgagctttggatggctaatggctttatttcgtccaataaaa |
15083152 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
| ||||||| |||||||||| ||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
15083151 |
tattggacgaagaagatatcgacaatgatgtgtggaatgaattatattgtagatcattttt |
15083091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 15429202 - 15429563
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
15429202 |
tcataggaaaggagatactaaggaaatgtgggggagtacctcttgcagcaaaagcactaggaagtctcttgcgctttaaaagagaggaaaaggagtggcg |
15429301 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaag-ttacttgaatttgccgattaaactgagaca |
199 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
15429302 |
ctatatcaaggaaagcaaaatatggaatttacaagatgaagaaaatgtcatgcctgcattgagattaagtttacttgaatttgccagttaaactgagaca |
15429401 |
T |
|
| Q |
200 |
atgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaa |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| || ||||| |||||| |||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
15429402 |
atgttttgccttctgtgcattatttcccaaagatgaaagaataagtaagcagttactaattcagctttggatggctaatgactttatttcttccaatgaa |
15429501 |
T |
|
| Q |
300 |
ttgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
15429502 |
atgttggacgaggaagatatcgcgaatgatgtgtggaatgaaatatattggagatccttttt |
15429563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 15331676 - 15331318
Alignment:
| Q |
3 |
ataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaact |
102 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||| ||| |
|
|
| T |
15331676 |
atagggaaagagatactaaagaagtgtggcggagtacctcttgcagcaatagcactaggaagtctcttgcgttttaaaagagaggtaaatgagtggcact |
15331577 |
T |
|
| Q |
103 |
atgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaatg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
15331576 |
atgtcaaggaaagcaaattatggagtttacaagatgaagattatgtcatgcctaccttgagattaagttacttgaatttgccagtaaaattgagacaatg |
15331477 |
T |
|
| Q |
203 |
ttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaattg |
302 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| || ||| || || |
|
|
| T |
15331476 |
ctttgccttctgtgctctatttatcaaagatgaaagaataagtaagaagtttctaattgagctttggatggctaatggcttggtttcatctaatgaaatg |
15331377 |
T |
|
| Q |
303 |
ttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||| ||||||||| || |||| | ||||||||||| |||| | |||||||||||| |
|
|
| T |
15331376 |
ttggacgaggaagatattggcaatggggtgtggaatgaattatacttgagatcattttt |
15331318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 15347503 - 15347143
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||| || |||||| |||| |||||| ||||||| ||||| ||||||| |||||| |||||| | ||||| |||||| || ||||||| || ||| |
|
|
| T |
15347503 |
tcatagggaaagagatagtaaaaaagtgtaggggagtccctctcgcagcaaaagcactgggaagtttattgcggtttaaacgagaagaaaaggaatggcg |
15347404 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
||||||||||||||| || |||||| |||||||| ||| || |||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
15347403 |
ctatgtcaaggaaagtaagctatggaatttacaaggtgagaattctgtcatgcctgcgttgagattaagttacttgaatttgccggtaaaattgagacaa |
15347304 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||| | |
|
|
| T |
15347303 |
tgttttgccttttgtgcactatttcccaaggatgaaattataagcaaacagtttgtaattgagctttggatggctaatggatttattccatccaatggaa |
15347204 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||| | |||||||| |||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
15347203 |
tgttggaagcagaagatattggtaatgaagcatggaatgaattatattgtagatcattttt |
15347143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 16397167 - 16396810
Alignment:
| Q |
4 |
taggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaacta |
103 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||| || |
|
|
| T |
16397167 |
tagggaaggagataataaagaagtgtgggggattccctcttgcagcaatagcactaggaagtctcttgcggtttaaaagagaagaaaaggaatggctata |
16397068 |
T |
|
| Q |
104 |
tgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaatgt |
203 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||| | ||||||||||||| |||||||||||||||||| ||||||| | ||| | || ||||| |
|
|
| T |
16397067 |
tgtcaaggaaagcaagctatggaatttacaaggtgaagcttatgtcatgcctgccttgagattaagttacttgcatttgccagtaaaattaaggcaatgc |
16396968 |
T |
|
| Q |
204 |
tttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaattgt |
303 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| |||| ||| ||| | ||||||| ||||||| ||||| ||||| ||||| |||||| || ||| |
|
|
| T |
16396967 |
ttttccttctgtgcattatttcccaaagatgaaattataagcaagcagcttttaattgatctttggacagctaacggcttcatttcttccaatcaaatgt |
16396868 |
T |
|
| Q |
304 |
tggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
|||| | || || || ||||| ||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
16396867 |
tggaagcagatgacattggtaacgaggtgtggaatgaattatattggaggtcattttt |
16396810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 16403762 - 16403402
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||| |||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| |||||| |
|
|
| T |
16403762 |
tcataggaaaggagatactaaaaaagtgtgtgtgagtccctcttgcggcaatagcactaggaagtcttttgcggtttaaaagagaagaaaaagagtggct |
16403663 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
|||||| |||||||| || ||||||||||| ||| ||||||| | |||| | |||| || | | |||||||| | |||||||| | ||| ||||||| |
|
|
| T |
16403662 |
ctatgtgaaggaaagtaagctatggagtttagaaggtgaagattacgtcaagtctgccttaaaactaagttacctcaatttgccagtaaaattgagacag |
16403563 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||||| || | ||| || ||| | |||||||||||||| ||||||||||| ||||| |||||| || |
|
|
| T |
16403562 |
tgtttttccttttgtgcattatttcccaaagatgaaattatgagcaagcacttcatgattgagctttggattgctaatggcttcatttcatccaatcaaa |
16403463 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||| | |||| | | ||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16403462 |
tgttggatgcagaaggtgttggtaatgaggtgtggaatgaattatattggagatcattttt |
16403402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 15453044 - 15453404
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||| ||||||||| |||| |||||||| ||||| ||| | |||||||| |||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
15453044 |
tcataggcaaggagatagtaaataagtgtggaggagttcctttggcagcaattgcactaggaagtctcttgcgttttaaaagagaagaaaaagagtggct |
15453143 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||| ||| || |||||||||||| ||||||||||| ||||| |||||||| || ||| |||||||| |
|
|
| T |
15453144 |
ctatgtcaagaaaagcaaactttggagtttacaaggcgaaaattctgtcatgcctgccttgagattaagctacttcaatttgccaataaaattgagacaa |
15453243 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||| |||| ||| || | |||||||||||||||| |||||| |||||||| || ||| || |
|
|
| T |
15453244 |
tgtttttccttctgtgcattatttcccaaaggtgaaactataagcaagaagatgataattgagctttggatttgtaatggttttatttcttctaatcaaa |
15453343 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||| | |||||| | ||| ||||| |||| |||||| |||||||||||||| |||| |
|
|
| T |
15453344 |
tgttggaagcagaagatgttggtcatgaggtgtgtaatgaattatattggagatcactttt |
15453404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 15336128 - 15335770
Alignment:
| Q |
3 |
ataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaact |
102 |
Q |
| |
|
||||| || |||||| | || ||||||| ||||||||||||||| |||||||||||||||||||||||| | || |||||| | |||||||||||| || |
|
|
| T |
15336128 |
atagggaacgagatagttaaaaagtgtgtgggagtgcctcttgcggcaatagcactaggaagtctcttgtgtttcaaaagagacgaaaatgagtggctct |
15336029 |
T |
|
| Q |
103 |
atgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaatg |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| || ||||||||||| |||||| ||||||| |||||||| || | ||| ||||||| || |
|
|
| T |
15336028 |
atgtcaaggaaagcaagctatggagtttacaaggtgataattcagtcatgcctgccttgagactaagttatttgaatttaccagtaaaattgagacagtg |
15335929 |
T |
|
| Q |
203 |
ttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaattg |
302 |
Q |
| |
|
||||||||| |||||||| |||||||||||| || |||||| ||||| || ||||| || || ||||||||||||||||||||||| || ||| || | |
|
|
| T |
15335928 |
ttttgccttgtgtgcactctttcccaaagataaactaataagaaaacactttctaatagaactctggatggctaatggctttatttcttcaaatgaaaag |
15335829 |
T |
|
| Q |
303 |
ttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||| | | ||||| || |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
15335828 |
ttggaagatggtgatattggcaatgaggtgtggaatgaattatattggagatcattttt |
15335770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 17928082 - 17927733
Alignment:
| Q |
12 |
gagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaactatgtcaagg |
111 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||| || |||| ||||||||||| |
|
|
| T |
17928082 |
gagatcctaaagaagtgtaggggagtgcctcttgcagcaataacattaggaagtctgttgcgctttaaaagagaagaaaaagaatggatctatgtcaagg |
17927983 |
T |
|
| Q |
112 |
aaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaatgttttgcctt |
211 |
Q |
| |
|
| ||||| || ||||| ||||||| ||| | |||||||| || |||||||||||||||||| | |||||| |||| |||||||||| |||||||| |
|
|
| T |
17927982 |
acagcaagttgtggagcttacaaggtgagaactctgtcatgcaggccttgagattaagttacttgtacttgccggttaagttgagacaatgctttgcctt |
17927883 |
T |
|
| Q |
212 |
ctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaattgttggacggg |
311 |
Q |
| |
|
|| ||| ||||||| ||||||||| |||||| || ||| | |||||||| |||||| |||| ||||| || |||||||||||| || ||||| | | |
|
|
| T |
17927882 |
ctctgctatatttccaaaagatgaattaataagtaagcagcttctaattgaactttgggtggccaatggattcatttcgtccaatgaaagtttggaagcg |
17927783 |
T |
|
| Q |
312 |
gaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
17927782 |
gaagatattggtgatgaggtgtggaatgaattatattggagttcattttt |
17927733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 15357772 - 15357412
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||||| |||||||| |||| ||||||||||||| |||| || |||||| || ||||||| || ||| |
|
|
| T |
15357772 |
tcatagggaaggagatagtaaaaaagtgtgggggagttcctcttgcggcaaaagcactaggaagtttcttacgttttaaacgagaagaaaaggaatggcg |
15357673 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| || |||||| || | ||||| ||||||||||||||||||||| | ||| |||| || |
|
|
| T |
15357672 |
ctatgtcaaggaaagcaatctatggagtttacaaggtgagaattcagtcatgtcttccttgaggttaagttacttgaatttgccggtaaaattgaggcag |
15357573 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
|| |||||||| |||||||| ||| |||| ||| |||| |||| || ||||| | ||||||||||||||||||||||| |||||||| |||||| || |
|
|
| T |
15357572 |
tgctttgccttttgtgcacttttttccaaggatcaaattataagtaagcagtttttgattgagctttggatggctaatggatttatttcatccaatgaaa |
15357473 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
| |||| | |||||||||| |||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
15357472 |
tactggaagcacaagatatcggcaatgaggtgtggaatgaattatattgtagatcattttt |
15357412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 16414495 - 16414135
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||| || |||||| ||||||| ||| ||||||| |||||||| ||||| ||| |||||||||||||||| || |||||| | |||| |||||| |
|
|
| T |
16414495 |
tcatagggaaagagatagtaaagaaatgtaggggagtacctcttgccgcaatggcattaggaagtctcttgcgtttcaaaagagaggaaatagagtggct |
16414396 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
| |||||||||||||||| ||||| |||||||| ||| | ||||||||||| || || ||||||||||||||||| || ||||| |||||||| |
|
|
| T |
16414395 |
caatgtcaaggaaagcaagctatgggatttacaaggtgagaactgcgtcatgcctgccttaaggttaagttacttgaatttaccagttaaattgagacaa |
16414296 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||||||||| ||||| ||| |||| |||||| |
|
|
| T |
16414295 |
tgtttttccttctgtgcactatttcccaaagatgaaataataaacaagaagtttttgattgacctttggatggcaaatggttttctttcatccaatgcta |
16414196 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
|||| | |||||||| || |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16414195 |
tgttacaaacagaagatattggcaatgaggtgtggaatgagttatattggagatcattttt |
16414135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 30521164 - 30521211
Alignment:
| Q |
3 |
ataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagca |
50 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
30521164 |
ataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagca |
30521211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 30561504 - 30561551
Alignment:
| Q |
3 |
ataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagca |
50 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
30561504 |
ataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagca |
30561551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 15421638 - 15421687
Alignment:
| Q |
311 |
ggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
15421638 |
ggaagatatcg-taatgaggtgtggaatgaactgtattggagatcattttt |
15421687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 17983465 - 17983407
Alignment:
| Q |
3 |
ataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactagg |
61 |
Q |
| |
|
||||| ||||||||| |||| |||||||| ||| ||||||||||||||| |||| |||| |
|
|
| T |
17983465 |
ataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcaaaagcattagg |
17983407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 8187603 - 8187243
Alignment:
| Q |
1 |
tcataggaaaggagatactaaagaagtgtgggggagtgcctcttgcagcaatagcactaggaagtctcttgcgctttaaaagacaagaaaatgagtggaa |
100 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||| |
|
|
| T |
8187603 |
tcatagggaaggagatagcaaaaaagtgtgggggtgtacctcttgcagcaatagcactaggaagtctcttgcgttttaaaagagaggaaaaggagtggct |
8187504 |
T |
|
| Q |
101 |
ctatgtcaaggaaagcaaattatggagtttacaagatgaagataatgtcatgcctgcgttgagattaagttacttgaatttgccgattaaactgagacaa |
200 |
Q |
| |
|
||||||| |||||| || ||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
8187503 |
ctatgtcttggaaagtaatctatggagtttacaaggtgagaatacagtcatgcctgccttgagattaagttacttgaatttgccaataaaattgagacaa |
8187404 |
T |
|
| Q |
201 |
tgttttgccttctgtgcactatttcccaaagatgaaataataaccaaacagttcctaattgagctttggatggctaatggctttatttcgtccaataaat |
300 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||| |||||| || || ||||||||||| || |||||||||||||| |||||||| |||||| || |
|
|
| T |
8187403 |
tgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcctaattgatctatggatggctaatggttttatttcatccaatgaaa |
8187304 |
T |
|
| Q |
301 |
tgttggacggggaagatatcggtaatgagatgtggaatgaactatattggagatcattttt |
361 |
Q |
| |
|
| | || | || ||||| || |||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
8187303 |
ttctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatcattttt |
8187243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University