View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_64 (Length: 371)
Name: NF18243_high_64
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 46503510 - 46503193
Alignment:
| Q |
13 |
gcagagaggaagctcacgtttgaaagcatcgattttgagacgttcttcttctaagcgagaaacaaattcttcgagtttgtagctttgatcactttgttct |
112 |
Q |
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| T |
46503510 |
gcagagaggaagctcacgtttgaaagcatcgattttgagacgttcttcttctaagcgagaaacaaattcttcgagtttgtagctttgatcactttgttct |
46503411 |
T |
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| Q |
113 |
ccaaatgatttcagtaacatggagtagctatgtggcttgcaatccaagcctagttcagatgatgaagccattctttgttaaaaaactaaataataatcac |
212 |
Q |
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| T |
46503410 |
ccaaatgatttcagtaacatggagtagctatgtggcttgcaatccaagcctagttcagatgatgaagccattctttgttaaaaaaataaattataagcac |
46503311 |
T |
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| Q |
213 |
tgttttttaagatatagatatgttcatatgacaaaatagaaaagaaggtggtttgtatgtaggaagaaacaagagcaaaagagagtgtttggcttattgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46503310 |
tgttttttaagatatagatatgttcatatgacaaaatagaaaagaaggtggtttgtatgtaggaagaaacaagagcaaaagagagtgtttggcttattgc |
46503211 |
T |
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| Q |
313 |
tttgtagttcttgtgggg |
330 |
Q |
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|||||||||||||||||| |
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| T |
46503210 |
tttgtagttcttgtgggg |
46503193 |
T |
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