View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_67 (Length: 358)
Name: NF18243_high_67
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 8261155 - 8260819
Alignment:
| Q |
13 |
ataatacttgatgtactctcttaaagaaacttgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcacgcaccaaata |
112 |
Q |
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| T |
8261155 |
ataatacttgatgtactctcttaaagaaaattgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcaggcaccaaata |
8261056 |
T |
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| Q |
113 |
agcaatgaaaaagacaaacgaaacaacattttgttttcaattaacaagtgcccaaagcagccacaaatga-------annnnnnnnnnccaaagtggtcc |
205 |
Q |
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| T |
8261055 |
agcaatgaaaaagacaaacgaaacaacattttgattctaattaacaagtgttcaaagcagccacaaattattttttttatttttttttccaaagtggtcc |
8260956 |
T |
|
| Q |
206 |
ctttatgttttccttgctcaccaagcaatttgactattatcagatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
305 |
Q |
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| T |
8260955 |
ctttatgttttccttggtcaccaagcaatttgactattatcatatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
8260856 |
T |
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| Q |
306 |
taaatcatttcagcttttcacacttccataaacagaa |
342 |
Q |
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| T |
8260855 |
taaatcatttcagctttccacacttacataaacagaa |
8260819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 8265874 - 8265789
Alignment:
| Q |
254 |
atatgatatctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaaca |
339 |
Q |
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| T |
8265874 |
atatgatgtctataaatggatcaagttaattacatgaagttcaacccacaactaaatcatttcagctttccacacttacataaaca |
8265789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 339
Target Start/End: Complemental strand, 8258915 - 8258716
Alignment:
| Q |
152 |
attaacaagtgcccaaagcagccacaaatgaannnnnnnnnnccaaagtggtccc-tttatgttttccttgctcaccaagcaatttgactattatcagat |
250 |
Q |
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| T |
8258915 |
attaacaagtgtccaaagcagccacaaatgaattttttt----caaagtggtcccatttaggttctgcttggtcgccaagcaatttgactatcatcatat |
8258820 |
T |
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| Q |
251 |
ctcatatgatat------------ctataaatagatcaagtta---actacatgaagttcaacctacaactaaatcatttcagcttttcacacttccata |
335 |
Q |
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| T |
8258819 |
ctcatatgatatgaaatgataactctataaatagatcaagttattaattacatgaagttcaacccacaactaaatcatttcagctttgcacacttacata |
8258720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 8265949 - 8265901
Alignment:
| Q |
195 |
caaagtggtccc-tttatgttttccttgctcaccaagcaatttgactat |
242 |
Q |
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| T |
8265949 |
caaagtggtcccatttatgttctccttggtcgccaagcaatttgactat |
8265901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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