View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_high_70 (Length: 348)

Name: NF18243_high_70
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_high_70
NF18243_high_70
[»] chr8 (17 HSPs)
chr8 (19-296)||(33826014-33826291)
chr8 (232-296)||(886495-886559)
chr8 (238-296)||(12653689-12653747)
chr8 (158-220)||(32231847-32231909)
chr8 (296-338)||(33826391-33826433)
chr8 (170-215)||(20244716-20244761)
chr8 (170-215)||(20248400-20248445)
chr8 (232-296)||(8418349-8418413)
chr8 (254-296)||(27868372-27868414)
chr8 (238-296)||(32967324-32967382)
chr8 (238-296)||(38252485-38252543)
chr8 (145-296)||(2195373-2195528)
chr8 (232-296)||(2797036-2797100)
chr8 (152-220)||(5391960-5392028)
chr8 (232-296)||(14748753-14748817)
chr8 (152-220)||(17790224-17790292)
chr8 (180-220)||(32241551-32241591)
[»] chr7 (14 HSPs)
chr7 (232-296)||(34064211-34064275)
chr7 (242-296)||(3667924-3667978)
chr7 (238-296)||(28333173-28333231)
chr7 (145-296)||(37496444-37496599)
chr7 (170-215)||(44341041-44341086)
chr7 (232-296)||(5068345-5068409)
chr7 (158-217)||(9658756-9658815)
chr7 (232-296)||(10355782-10355846)
chr7 (232-284)||(14648978-14649030)
chr7 (161-219)||(25778657-25778716)
chr7 (238-296)||(30463018-30463076)
chr7 (158-220)||(33774168-33774230)
chr7 (238-296)||(34963858-34963916)
chr7 (232-296)||(2849251-2849315)
[»] chr5 (15 HSPs)
chr5 (238-296)||(20189894-20189952)
chr5 (158-296)||(34534842-34534982)
chr5 (258-296)||(22398301-22398339)
chr5 (254-296)||(25344786-25344828)
chr5 (191-296)||(15898143-15898251)
chr5 (232-296)||(19889581-19889645)
chr5 (232-296)||(39183675-39183739)
chr5 (182-220)||(4044604-4044642)
chr5 (186-220)||(9426681-9426715)
chr5 (186-220)||(13597975-13598009)
chr5 (182-220)||(20369217-20369255)
chr5 (232-282)||(35585678-35585728)
chr5 (238-283)||(3725188-3725233)
chr5 (159-220)||(19889887-19889948)
chr5 (164-220)||(72233-72289)
[»] chr4 (21 HSPs)
chr4 (232-296)||(55360395-55360459)
chr4 (169-220)||(388547-388598)
chr4 (254-296)||(29644373-29644415)
chr4 (186-220)||(51572354-51572388)
chr4 (158-217)||(13529780-13529839)
chr4 (232-296)||(22872435-22872499)
chr4 (145-220)||(20964421-20964496)
chr4 (145-220)||(33047403-33047478)
chr4 (233-296)||(49448838-49448901)
chr4 (238-296)||(1825295-1825353)
chr4 (238-296)||(3686013-3686071)
chr4 (238-284)||(26799275-26799321)
chr4 (238-296)||(38976993-38977051)
chr4 (238-296)||(39052948-39053006)
chr4 (186-220)||(39979726-39979760)
chr4 (238-296)||(39979782-39979840)
chr4 (232-296)||(9052097-9052161)
chr4 (158-217)||(21954833-21954893)
chr4 (232-296)||(22020557-22020621)
chr4 (238-282)||(37309700-37309744)
chr4 (232-296)||(38319907-38319971)
[»] chr1 (8 HSPs)
chr1 (152-282)||(27698724-27698858)
chr1 (232-296)||(52382434-52382498)
chr1 (145-220)||(24131528-24131603)
chr1 (233-296)||(25842596-25842659)
chr1 (254-296)||(34813935-34813977)
chr1 (238-296)||(48242638-48242696)
chr1 (184-220)||(6784947-6784983)
chr1 (232-296)||(29225749-29225813)
[»] scaffold0221 (1 HSPs)
scaffold0221 (238-296)||(8889-8947)
[»] chr2 (10 HSPs)
chr2 (186-220)||(8385022-8385056)
chr2 (232-296)||(44424310-44424374)
chr2 (240-295)||(3487398-3487453)
chr2 (145-220)||(7213380-7213455)
chr2 (238-293)||(28108425-28108480)
chr2 (182-289)||(31592493-31592603)
chr2 (238-296)||(41436081-41436139)
chr2 (238-296)||(43077773-43077831)
chr2 (238-282)||(13375251-13375295)
chr2 (232-296)||(16864981-16865045)
[»] scaffold0685 (1 HSPs)
scaffold0685 (232-296)||(6447-6511)
[»] scaffold0262 (1 HSPs)
scaffold0262 (238-296)||(12483-12541)
[»] scaffold0058 (1 HSPs)
scaffold0058 (238-296)||(14458-14516)
[»] chr6 (4 HSPs)
chr6 (238-296)||(7301127-7301185)
chr6 (239-296)||(7739565-7739622)
chr6 (232-296)||(33017991-33018055)
chr6 (238-282)||(33109375-33109419)
[»] chr3 (10 HSPs)
chr3 (238-296)||(32023148-32023206)
chr3 (158-219)||(3862299-3862360)
chr3 (158-215)||(29809695-29809752)
chr3 (143-220)||(30261629-30261706)
chr3 (158-218)||(42547235-42547296)
chr3 (232-296)||(39329797-39329861)
chr3 (232-296)||(41287258-41287322)
chr3 (238-298)||(45392092-45392152)
chr3 (145-197)||(47684708-47684760)
chr3 (232-296)||(52325173-52325237)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 33826014 - 33826291
Alignment:
Q  19 aagaaggttatcctcaaattattacaaaatgatttgacaaatatcattactctaaatttcattatcacacaccatctataaatagatgtcttggttgtcg 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  33826014 aagaaggttatccccaaattattacaaaatgatttgacaaatatcattactctaaatttcattatcacacaccatctataaatagatattttggttgtcg 33826113  T
Q  119 gtgtttctaatcagtactcgtcccctgtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaa 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33826114 gtgtttctaatcagtactcgtcccccgtcccaaaatatttgagtcatttacaaaaaagatttatcctaaaataattgacttatttcacttttcaatacaa 33826213  T
Q  219 tagtaannnnnnncaattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    || |||       ||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||    
T  33826214 tattaatttttttcaattataactctaatcaatactactttcatcattctcaattcaatatattctgctttacattta 33826291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 886559 - 886495
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||| ||||| || |||||||| |||||||||||||||||||||||| |||| ||||||    
T  886559 caattataacactaattaatattacttttatcattctcaattcgatatattctactttgcattta 886495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 12653689 - 12653747
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||| || || ||||||||||||||||||||||| ||||||||  |||||||||||    
T  12653689 taactctgattaatattactttcatcattctcaattcaatatattccactttacattta 12653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 32231909 - 32231847
Alignment:
Q  158 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||| ||||||   || |||||||| |||||||| |||||||||||||||||||||    
T  32231909 tgagtcatttataaaaaaatattgtcccaaaaaaattgactcatttcacttttcaatacaata 32231847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 33826391 - 33826433
Alignment:
Q  296 acggatggagtaatgttaatgtatcaaacgtttcttaccttct 338  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  33826391 acggagggagtaatattaatgtatcaaacgtttcttaccttct 33826433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 20244716 - 20244761
Alignment:
Q  170 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 215  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  20244716 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 20244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 20248445 - 20248400
Alignment:
Q  170 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 215  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  20248445 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 20248400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 8418413 - 8418349
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || | ||||||||||| |||||||||  |||||||| |||||||||||    
T  8418413 caattataactctaattaatactactttcatcactctcaattcagtatattctactttacattta 8418349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 27868414 - 27868372
Alignment:
Q  254 tactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  27868414 tactttcatcattctcaattcaatatattctactttgcattta 27868372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 32967382 - 32967324
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  ||||| |||||    
T  32967382 taactctaattaatactactttcatcattctcaattcaatatattccactttaaattta 32967324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 38252543 - 38252485
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||| | |||||||||||||  |||||| ||||||||  |||||||||||    
T  38252543 taactctaatcaatactactttcatcatttccaattcaatatattccactttacattta 38252485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 2195373 - 2195528
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaa 240  Q
    |||||| ||||  |||||||||| |||||||   || |||||||| |||||||  ||||||||||||||||||| | |||           ||||| |||    
T  2195373 gtcccataataactgagtcatttgcaaaaaaatgttgtcccaaaaaaattgacccatttcacttttcaatacaacaataattacttttttccaattataa 2195472  T
Q  241 ctctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||| || | ||||||||||| || |||||| ||||||||| |||| ||||||    
T  2195473 ctctaattaatactactttcatcactcccaattcaatatattctactttgcattta 2195528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 2797036 - 2797100
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || ||||||||||| | || |||||| ||||||||| |||| ||||||    
T  2797036 caattataactctaattaatattactttcattactcccaattcaatatattctactttgcattta 2797100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 5391960 - 5392028
Alignment:
Q  152 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||||| ||||| ||||||| |  | || |||||||| ||| | |||||||||||||||||||||    
T  5391960 aatatttgagccatttgcaaaaaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaata 5392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 14748817 - 14748753
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||| ||||| || | |||||||| |||||||||||| ||||||||| |||| ||||||    
T  14748817 caattataacactaattaatactactttcaccattctcaattcaatatattctactttgcattta 14748753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 17790292 - 17790224
Alignment:
Q  152 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||| ||||| ||||| |||||||   || ||||| || |||| |||||||||||||||||||||||||    
T  17790292 aataattgagccatttgcaaaaaaatattgtcccagaaaaatttacttatttcacttttcaatacaata 17790224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 32241591 - 32241551
Alignment:
Q  180 tatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  32241591 tatcctaaaataaatgagttatttcacttttcaatacaata 32241551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 34064211 - 34064275
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||| |||||||||||    
T  34064211 caattataactctaattaatattactttcatcactctcaattcaatatattctactttacattta 34064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 3667978 - 3667924
Alignment:
Q  242 tctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||| || ||||||||||||| ||||||||| ||||||||| |||||||||||    
T  3667978 tctaattaatattactttcatcactctcaattcaatatattctactttacattta 3667924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 28333173 - 28333231
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||| || |||||| ||||||||| |||||||||||    
T  28333173 taactctaattaatattactttcatcactcccaattcaatatattctactttacattta 28333231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 37496599 - 37496444
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaa 240  Q
    |||||| ||||  |||||||||| |||||||   ||||||||||| |||||||  |||||||||||||| |||| | |||           ||||| |||    
T  37496599 gtcccataataactgagtcatttgcaaaaaaatattatcccaaaaaaattgacccatttcacttttcaacacaacattaattacttttttccaattataa 37496500  T
Q  241 ctctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    || |||| || | ||||||||||| ||||||||| ||||||||| |||||||||||    
T  37496499 ctttaattaatactactttcatcactctcaattcaatatattctactttacattta 37496444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 44341041 - 44341086
Alignment:
Q  170 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 215  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  44341041 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 44341086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 5068409 - 5068345
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||||||||| || ||| ||||| ||||||||| |||||||||||    
T  5068409 caattataactctaattaatattactttcaccactcttaattcaatatattctactttacattta 5068345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 9658756 - 9658815
Alignment:
Q  158 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 217  Q
    |||||||||| ||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  9658756 tgagtcatttgcaaaaaaaatattatcctaaaa-aattgacttatttcacttttcaataca 9658815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 10355846 - 10355782
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||||||| | |||||||||||| ||||||||| |||| ||||||    
T  10355846 caattataactctaattaatattacttttaccattctcaattcaatatattctactttgcattta 10355782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 14649030 - 14648978
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattct 284  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| |||||||||    
T  14649030 caattataactctaattaatattactttcatcactctcaattcaatatattct 14648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 25778657 - 25778716
Alignment:
Q  161 gtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaatacaat 219  Q
    ||||||| ||||||| || || || ||||| |||||||||||||||||||||||||||||    
T  25778657 gtcattttcaaaaaaaatattgtctcaaaaaaattgacttatttcacttttcaatacaat 25778716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 30463018 - 30463076
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||||| ||||||| ||||||||   ||||||||||    
T  30463018 taactctaattaatattactttcatcattttcaattcaatatattccattttacattta 30463076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 33774230 - 33774168
Alignment:
Q  158 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||||||||||||| |  | | ||||||||| ||| | |||||||||||||||||||||    
T  33774230 tgagtcatttacaaaaaaaaagtgttccaaaataactgagtcatttcacttttcaatacaata 33774168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 34963916 - 34963858
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||||||||||||  |||||||   |||||||||||    
T  34963916 taactctaattaatattactttcatcattctcaattaaatatatttcactttacattta 34963858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 2849251 - 2849315
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| ||| |||||| || | |||||||| || ||||||||| ||||||||| |||||||||||    
T  2849251 caattataattctaattaatactactttcaccactctcaattcaatatattctactttacattta 2849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 20189894 - 20189952
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||  |||||||||||    
T  20189894 taactctaattaatattactttcatcattctcaattcaatatattccactttacattta 20189952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 296
Target Start/End: Original strand, 34534842 - 34534982
Alignment:
Q  158 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn--caattctaactctaatcaagatta 255  Q
    |||| |||||||||||||   || |||||||| |||||| | | ||||||||||||||||||| |||         ||||| |||||||||| || ||||    
T  34534842 tgagccatttacaaaaaaatattgtcccaaaaaaattgattcagttcacttttcaatacaatattaattattttttcaattataactctaattaatatta 34534941  T
Q  256 ctttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||| |||||||||||||| ||||||| | ||||| |||||    
T  34534942 cttttatcattctcaattcaatatattatactttatattta 34534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 22398301 - 22398339
Alignment:
Q  258 ttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  22398301 ttcatcattctcaattcaatatattctgctttacattta 22398339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 25344828 - 25344786
Alignment:
Q  254 tactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  25344828 tactttcatcattctcaattcaatatattctactttacattta 25344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 15898143 - 15898251
Alignment:
Q  191 aattgacttatttcacttttcaatacaatagta---annnnnnncaattctaactctaatcaagattactttcatcattctcaattcgatatattctgct 287  Q
    |||||||||||||||||||||||||||||| ||   |       ||||| |||| ||||| || |||||||||| || ||||||||| ||||||||| ||    
T  15898143 aattgacttatttcacttttcaatacaatattaattacttttttcaattataacactaattaatattactttcaccactctcaattcaatatattctact 15898242  T
Q  288 ttacattta 296  Q
    || ||||||    
T  15898243 ttgcattta 15898251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 19889645 - 19889581
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||||||||| || | ||||||| ||||||||| |||||||||||    
T  19889645 caattataactctaattaatattactttcaccactttcaattcaatatattctactttacattta 19889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 39183739 - 39183675
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  39183739 caattataactctaattaatattactttcatcactctcaattcaatatattccactttgcattta 39183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 4044642 - 4044604
Alignment:
Q  182 tcccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  4044642 tcccaaaataattgaatcatttcacttttcaatacaata 4044604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 9426715 - 9426681
Alignment:
Q  186 aaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||||| |||||||||||||||||||||    
T  9426715 aaaataattgactcatttcacttttcaatacaata 9426681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 13597975 - 13598009
Alignment:
Q  186 aaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||||| |||||||||||||||||||||    
T  13597975 aaaataattgactcatttcacttttcaatacaata 13598009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 20369217 - 20369255
Alignment:
Q  182 tcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  20369217 tcccaaaaaaattgactcatttcacttttcaatacaata 20369255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 35585728 - 35585678
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatatt 282  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||| |||||||    
T  35585728 caattataactttaatcaatattactttcatcactctcaattcaatatatt 35585678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 3725188 - 3725233
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattc 283  Q
    |||||||||| || ||||||||||||| || |||||||||||||||    
T  3725188 taactctaattaatattactttcatcactcacaattcgatatattc 3725233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 19889948 - 19889887
Alignment:
Q  159 gagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||| ||||||||  || ||| |||| ||||||| ||||||||||| ||||||||||    
T  19889948 gagtcatttgcaaaaaagtattgtcctaaaaaaattgacctatttcactttccaatacaata 19889887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 72289 - 72233
Alignment:
Q  164 atttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||| ||||||||  || |||||||| |||||||  |||||||||||||||||||||    
T  72289 atttgcaaaaaagtattgtcccaaaaaaattgacccatttcacttttcaatacaata 72233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 55360459 - 55360395
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||| | |||||||||||    
T  55360459 caattataactctaattaatattactttcatcactctcaattcaatatattgtactttacattta 55360395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 388598 - 388547
Alignment:
Q  169 caaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||| | ||||||||| | ||||||||||||||||||||||||||||||    
T  388598 caaaaaaaaattatcccaacaaaattgacttatttcacttttcaatacaata 388547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 29644373 - 29644415
Alignment:
Q  254 tactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  29644373 tactttcatcattctcaattcaatatattctactttacattta 29644415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 51572388 - 51572354
Alignment:
Q  186 aaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||||||||||||||||||||||||||||||    
T  51572388 aaaataattgacttatttcacttttcaatacaata 51572354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 13529780 - 13529839
Alignment:
Q  158 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 217  Q
    |||||||||| ||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  13529780 tgagtcatttgcaaaaaaaatattatcctaaaa-aattgacttatttcacttttcaataca 13529839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 22872499 - 22872435
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  22872499 caattataactctaattaatattactttcatcactctcaattcaatatattccactttgcattta 22872435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 20964496 - 20964421
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||| ||||  |||||||||| |||||||   || ||||| || ||||||| ||||||||||||||||||||||    
T  20964496 gtcccataataactgagtcatttgcaaaaaaatattgtcccagaaaaattgacctatttcacttttcaatacaata 20964421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 33047403 - 33047478
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||| |||| ||||| ||||| ||||||| |  | ||||||||||| ||| | |||||||||||||||||||||    
T  33047403 gtcccataataattgagccatttgcaaaaaaaaagtgtcccaaaataactgagtcatttcacttttcaatacaata 33047478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 49448838 - 49448901
Alignment:
Q  233 aattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||| |||||||||| || | ||||||||||||||||||||| ||||||| | |||| ||||||    
T  49448838 aattataactctaattaatactactttcatcattctcaattcaatatattatactttgcattta 49448901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 1825353 - 1825295
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || |||| |||||||||| ||||||| ||||||||  |||||||||||    
T  1825353 taactctaattaatattattttcatcattttcaattcaatatattccactttacattta 1825295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3686013 - 3686071
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  3686013 taactctaattaatattactttcatcactctcaattcaatatattcaactttgcattta 3686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 26799321 - 26799275
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattct 284  Q
    |||||||||| || | ||||||||||||||||||||| |||||||||    
T  26799321 taactctaattaatagtactttcatcattctcaattcaatatattct 26799275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 38976993 - 38977051
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | ||||||||||||| ||||||| ||||||||  |||||||||||    
T  38976993 taactctaattaatactactttcatcattttcaattcaatatattccactttacattta 38977051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 39053006 - 39052948
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | |||||||| || ||||||||| ||||||||| |||||||||||    
T  39053006 taactctaattaatactactttcaccactctcaattcaatatattctactttacattta 39052948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 39979726 - 39979760
Alignment:
Q  186 aaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||| |||||||||||||||||||||||    
T  39979726 aaaataattgagttatttcacttttcaatacaata 39979760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 39979782 - 39979840
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || |||||||||||||||  |||||| ||||||||  |||||||||||    
T  39979782 taactctaattaatattactttcatcatttccaattcaatatattccactttacattta 39979840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 9052161 - 9052097
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||| ||||| || | ||||||||||||||| ||||| ||||||||| ||| |||||||    
T  9052161 caattataacactaattaatactactttcatcattctgaattcaatatattctacttaacattta 9052097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 21954893 - 21954833
Alignment:
Q  158 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 217  Q
    |||||||||| ||||||| || || |||||||| |||||||  ||||||||||||||||||    
T  21954893 tgagtcatttgcaaaaaaaatattgtcccaaaaaaattgaccaatttcacttttcaataca 21954833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 22020621 - 22020557
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| |  | |||||||| |||||||||||| ||||||||| |||| ||||||    
T  22020621 caattataactctaattattactactttcaccattctcaattcaatatattctactttgcattta 22020557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 37309700 - 37309744
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatatt 282  Q
    |||||||||| || ||||||||||||| ||||||||| |||||||    
T  37309700 taactctaattaatattactttcatcactctcaattcaatatatt 37309744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 38319907 - 38319971
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||| ||||| || | ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  38319907 caattataacactaattaatactactttcatcactctcaattcaatatattctactttgcattta 38319971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 27698724 - 27698858
Alignment:
Q  152 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaactctaat 247  Q
    |||| ||||||||||||||||||| |  | ||| ||||||||||| | ||||||||||||||||||||| |||           |  || ||||||||||    
T  27698724 aataattgagtcatttacaaaaaaaaagtgtcctaaaataattgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaat 27698823  T
Q  248 caagattactttcatcattctcaattcgatatatt 282  Q
     || ||||||||||||||||||||||| |||||||    
T  27698824 taatattactttcatcattctcaattcaatatatt 27698858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 52382498 - 52382434
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||||||||| || ||||||||| ||||||| | |||||||||||    
T  52382498 caattataactctaattaatattactttcaccactctcaattcaatatattttactttacattta 52382434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 24131603 - 24131528
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||| ||||  ||||||||||  |||||| || | ||||| || |||||||||||||||||||||||| |||||    
T  24131603 gtcccataataactgagtcatttgtaaaaaaaatatgtcccagaaaaattgacttatttcacttttcaatgcaata 24131528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 25842596 - 25842659
Alignment:
Q  233 aattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||| ||||| |||| || | ||||||||||||||||||| | ||||||||| |||||||||||    
T  25842596 aattataactataattaacactactttcatcattctcaatgcaatatattctactttacattta 25842659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 34813935 - 34813977
Alignment:
Q  254 tactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  34813935 tactttcatcattctcaattcaatatattctactttgcattta 34813977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 48242696 - 48242638
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||| || |||||||| |||||||||||||| ||||||||  |||||||||||    
T  48242696 taactttaattaatattacttttatcattctcaattcaatatattccactttacattta 48242638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 6784947 - 6784983
Alignment:
Q  184 ccaaaataattgacttatttcacttttcaatacaata 220  Q
    ||||||||||||| | |||||||||||||||||||||    
T  6784947 ccaaaataattgaatcatttcacttttcaatacaata 6784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 29225749 - 29225813
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || | ||||||||||| || |||||| ||||||||| |||| ||||||    
T  29225749 caattataactctaattaatactactttcatcactcccaattcaatatattctactttgcattta 29225813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 8889 - 8947
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||  |||| ||||||    
T  8889 taactctaattaatattactttcatcattctcaattcaatatattccactttgcattta 8947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 8385022 - 8385056
Alignment:
Q  186 aaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||||||||||||||||||||||||||||||    
T  8385022 aaaataattgacttatttcacttttcaatacaata 8385056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 44424374 - 44424310
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || | ||||||||||||||||||||| ||||||||  |||| ||||||    
T  44424374 caattataactctaattaatactactttcatcattctcaattcaatatattcaactttgcattta 44424310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 3487398 - 3487453
Alignment:
Q  240 actctaatcaagattactttcatcattctcaattcgatatattctgctttacattt 295  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||| |||| |||||    
T  3487398 actctaattaatattactttcatcactctcaattcaatatattctactttgcattt 3487453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 7213380 - 7213455
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||| ||||  |||||||||| ||||||| |  | ||||||||||||| | | |||||||||||||||||||||    
T  7213380 gtcccataataagtgagtcatttgcaaaaaataagtgtcccaaaataattaaatcatttcacttttcaatacaata 7213455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 28108480 - 28108425
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacat 293  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  ||||||||    
T  28108480 taactctaattaatactactttcatcattctcaattcaatatattccactttacat 28108425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 31592493 - 31592603
Alignment:
Q  182 tcccaaaataattgacttatttcacttttcaatacaatagta---annnnnnncaattctaactctaatcaagattactttcatcattctcaattcgata 278  Q
    |||||||| |||||||| ||||||||||||||||||||| ||   |       ||||| ||||| |||| || |||| |||||||| ||||||||| |||    
T  31592493 tcccaaaaaaattgactcatttcacttttcaatacaataataattactttttccaattataactttaattaatattattttcatcactctcaattcaata 31592592  T
Q  279 tattctgcttt 289  Q
    |||||| ||||    
T  31592593 tattctacttt 31592603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 41436081 - 41436139
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  |||| ||||||    
T  41436081 taactctaattaatactactttcatcattctcaattcaatatattccactttgcattta 41436139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 43077831 - 43077773
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||||| ||||||| |||||||   |||||||||||    
T  43077831 taactctaattaatattactttcatcattttcaattcaatatatttcactttacattta 43077773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 13375295 - 13375251
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatatt 282  Q
    |||||||||| || |||| |||||||||||||||||| |||||||    
T  13375295 taactctaattaatattattttcatcattctcaattcaatatatt 13375251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 16865045 - 16864981
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || || ||||||||||||| |||||| |||||||   |||||||||||    
T  16865045 caattataactctaattaatatcactttcatcattcacaattcaatatatttcactttacattta 16864981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 6511 - 6447
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||||||||| || ||||||||| ||||||| | |||||||||||    
T  6511 caattataactctaattaatattactttcaccactctcaattcaatatattttactttacattta 6447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 12541 - 12483
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | |||||||| |||||| ||||| ||||||||| |||||||||||    
T  12541 taactctaattaatactactttcaccattcttaattcaatatattctactttacattta 12483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 14458 - 14516
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || | ||||||||||||| ||||||| ||||||||  |||||||||||    
T  14458 taactctaattaatactactttcatcattttcaattcaatatattccactttacattta 14516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 7301185 - 7301127
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||  || ||||||||||||||| ||||||| ||||||||  |||||||||||    
T  7301185 taactctaactaatattactttcatcattttcaattcaatatattccactttacattta 7301127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 7739622 - 7739565
Alignment:
Q  239 aactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||||||| || | |||||| |||||||||||||| |||| |||| |||||||||||    
T  7739622 aactctaattaatactacttttatcattctcaattcaatatcttctactttacattta 7739565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 33018055 - 33017991
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || | |||||||| || || |||||| ||||||||| |||||||||||    
T  33018055 caattataactctaattaatactactttcaccactcccaattcaatatattctactttacattta 33017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 33109375 - 33109419
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatatt 282  Q
    |||||||||| || | ||||||||||||||||||||| |||||||    
T  33109375 taactctaattaatactactttcatcattctcaattcaatatatt 33109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 32023206 - 32023148
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  32023206 taactctaattaatattactttcatcactctcaattcaatatattcaactttgcattta 32023148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 3862360 - 3862299
Alignment:
Q  158 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaat 219  Q
    |||||||||| ||||||| | ||||   ||||||||| ||| ||||||||||||||||||||    
T  3862360 tgagtcatttgcaaaaaaaaattattttaaaataattaactcatttcacttttcaatacaat 3862299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 29809752 - 29809695
Alignment:
Q  158 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaata 215  Q
    ||||||||||  |||||| | |||||  ||||||||||| ||||||||||||||||||    
T  29809752 tgagtcatttgtaaaaaataattatcataaaataattgatttatttcacttttcaata 29809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 30261706 - 30261629
Alignment:
Q  143 ctgtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 220  Q
    |||||||| ||||  |||| ||||| |||||||   || |||||||| |||||||  |||||||||||||||||||||    
T  30261706 ctgtcccataataactgagccatttgcaaaaaaatattgtcccaaaaaaattgacccatttcacttttcaatacaata 30261629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 42547296 - 42547235
Alignment:
Q  158 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaatacaa 218  Q
    |||||||| | ||||||| || || |||||||| |||||||| |||||||||||||||||||    
T  42547296 tgagtcatctgcaaaaaaaatattgtcccaaaaaaattgactcatttcacttttcaatacaa 42547235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 39329861 - 39329797
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| ||| |||||| || | ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  39329861 caattataattctaattaatactactttcatcactctcaattcaatatattctactttgcattta 39329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 41287258 - 41287322
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || |||| |||||  | ||||||||| ||||||||| |||||||||||    
T  41287258 caattataactctaattaatattaatttcacaactctcaattcaatatattctactttacattta 41287322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 45392092 - 45392152
Alignment:
Q  238 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacatttacg 298  Q
    |||||||||| || |||||||||||||||  |||||| |||||||   |||||||||||||    
T  45392092 taactctaattaatattactttcatcatttccaattcaatatatttcactttacatttacg 45392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 47684708 - 47684760
Alignment:
Q  145 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgac 197  Q
    |||||||||||  |||| ||||||||||||| | || ||||||||||||||||    
T  47684708 gtcccaaaataactgagccatttacaaaaaaaaattgtcccaaaataattgac 47684760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 52325173 - 52325237
Alignment:
Q  232 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 296  Q
    ||||| |||||||||| || | ||||||| ||||||||||||| ||||||||  |||| ||||||    
T  52325173 caattataactctaattaatactactttcgtcattctcaattcaatatattccactttgcattta 52325237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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