View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_79 (Length: 312)
Name: NF18243_high_79
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_79 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 16625248 - 16625543
Alignment:
| Q |
17 |
atggagaacaccatgccaattccaattctttggaggagagtgattcctccttcattctttgtaatttttcttagtgatggcacgcatatccggtcgtaga |
116 |
Q |
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| T |
16625248 |
atggagaacaccatgccaattccaattctttgaaggagagtgattcctccttcattctttgtaatttttcttagtgatggcacgcatatccggtcgtaga |
16625347 |
T |
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| Q |
117 |
atgggacccataggcctatgacgatcaacgatatgactccgagtgaaccagctggaatttggaattttggtccgaggtgtcggtccattttcatggcttg |
216 |
Q |
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| T |
16625348 |
atgggacccataggcctatgacgatcaacgatatgactccgagtgaaccggctgggatttggaattttggtccgaggtgtcggtccattttcatggcttg |
16625447 |
T |
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| Q |
217 |
tgatacaataaatgttccttgttgcgccatcgtggtgaaacctaggataccggccgcccaaattggtaatgttcttgctaagcattttacctcttc |
312 |
Q |
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| T |
16625448 |
tgatacaataaatgttccttgttgcgccatcgcagtgaaacctaggataccggccgcccaaattggtaatgttcttgctaagcattttacctcttc |
16625543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 312
Target Start/End: Complemental strand, 25275277 - 25275111
Alignment:
| Q |
146 |
gatatgactccgagtgaaccagctggaatttggaattttggtccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgcca |
245 |
Q |
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| T |
25275277 |
gatatgactcccattgaaccagctgggatttgaaatttgggtcctaagtgtctgtccattttcaaggcttgtaatacagtgaatgttccttgttgtgcta |
25275178 |
T |
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| Q |
246 |
tcgtggtgaaacctaggataccggccgcccaaattggtaatgttcttgctaagcattttacctcttc |
312 |
Q |
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| T |
25275177 |
tggatgtgagactaagaatcccagctgcccaaattggaaaagttcttgctaaacatttaacctcttc |
25275111 |
T |
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